Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 3.7e-49 198.0 106 100.0
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 1.4e-43 179.5 107 91.6
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 5.2e-43 177.6 106 91.5
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 5.9e-39 164.1 106 84.9
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.0e-38 163.3 106 83.0
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 6.1e-36 154.1 106 76.4
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 1.2e-34 149.8 106 74.5
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 9.2e-32 140.2 106 73.6
A10p30210 Brassica napus HOM05D008756 ORTHO05D003415 1.1e-29 133.3 106 68.9
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 3.3e-29 131.7 100 75.0
C09p70620 Brassica napus HOM05D008756 ORTHO05D003415 3.6e-28 128.3 106 67.0
BraA10t45059Z Brassica rapa HOM05D008756 ORTHO05D003415 3.6e-28 128.3 106 67.0
BolC9t59806H Brassica oleracea HOM05D008756 ORTHO05D003415 9.2e-24 113.6 78 76.9
BolC9t59816H Brassica oleracea HOM05D008756 ORTHO05D003415 7.8e-23 110.5 83 69.9
BolC9t59813H Brassica oleracea HOM05D008756 ORTHO05D003415 1.0e-22 110.2 83 69.9
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.1e-21 106.7 104 60.6
BolC9t59804H Brassica oleracea HOM05D008756 ORTHO05D003415 2.8e-20 102.1 83 66.3
A10p09210 Brassica napus HOM05D008756 ORTHO05D003415 4.9e-17 91.3 83 59.0
A10p09330 Brassica napus HOM05D008756 ORTHO05D003415 1.9e-16 89.4 63 74.6
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 5.4e-16 87.8 88 55.7
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 7.1e-16 87.4 105 49.5
A10p09290 Brassica napus HOM05D008756 ORTHO05D003415 9.2e-16 87.0 83 56.6
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.1e-15 85.9 105 52.4
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.1e-15 85.9 104 51.9
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.7e-15 85.5 105 50.5
BolC9t59814H Brassica oleracea HOM05D008756 ORTHO05D003415 4.6e-15 84.7 56 80.4
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 4.6e-15 84.7 105 49.5
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 4.6e-15 84.7 105 50.5
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 4.6e-15 84.7 105 52.4
BraA10t43000Z Brassica rapa HOM05D008756 ORTHO05D003415 6.0e-15 84.3 64 73.4
BraA10t43004Z Brassica rapa HOM05D008756 ORTHO05D003415 6.0e-15 84.3 64 73.4
A10p09270 Brassica napus HOM05D008756 ORTHO05D003415 7.8e-15 84.0 64 73.4
A10p09190 Brassica napus HOM05D008756 ORTHO05D003415 1.0e-14 83.6 64 73.4
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.7e-14 82.8 105 49.5
BraA10t43008Z Brassica rapa HOM05D008756 ORTHO05D003415 2.3e-14 82.4 64 73.4
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.0e-14 82.0 101 50.5
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 3.0e-14 82.0 105 48.6
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.1e-14 81.3 105 49.5
A10p30190 Brassica napus HOM05D008756 ORTHO05D003415 6.6e-14 80.9 64 70.3
C09p70600 Brassica napus HOM05D008756 ORTHO05D003415 6.6e-14 80.9 64 70.3
BraA10t45057Z Brassica rapa HOM05D008756 ORTHO05D003415 6.6e-14 80.9 64 70.3
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 6.6e-14 80.9 105 45.7
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 6.6e-14 80.9 105 48.6
BraA10t45055Z Brassica rapa HOM05D008756 ORTHO05D003415 8.6e-14 80.5 71 69.0
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.1e-13 80.1 105 46.7
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.5e-13 79.7 105 46.7
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.5e-13 79.7 105 46.7
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.5e-13 79.7 108 45.4
BcaNung05843 Brassica carinata HOM05D008756 ORTHO05D003415 2.5e-13 79.0 58 74.1
BcaNung05844 Brassica carinata HOM05D008756 ORTHO05D003415 2.5e-13 79.0 58 74.1
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 3.3e-13 78.6 86 53.5
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.3e-13 78.6 87 49.4
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 4.3e-13 78.2 87 51.7
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 7.3e-13 77.4 103 45.6
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 7.3e-13 77.4 98 45.9
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 7.3e-13 77.4 98 45.9
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 7.3e-13 77.4 98 45.9
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 9.5e-13 77.0 109 47.7
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 1.6e-12 76.3 105 45.7
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.6e-12 76.3 88 51.1
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.1e-12 75.9 106 45.3
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.8e-12 75.5 108 43.5
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.6e-12 75.1 86 51.2
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 3.6e-12 75.1 104 45.2
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 3.6e-12 75.1 101 42.6
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.7e-12 74.7 87 46.0
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 4.7e-12 74.7 93 46.2
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.7e-12 74.7 87 50.6
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 6.2e-12 74.3 108 43.5
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 6.2e-12 74.3 105 45.7
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.1e-12 73.9 105 41.9
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.1e-12 73.9 105 41.9
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.1e-12 73.9 105 41.9
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 8.1e-12 73.9 105 43.8
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.4e-11 73.2 93 45.2
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 2.3e-11 72.4 87 47.1
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 2.3e-11 72.4 105 45.7
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.3e-11 72.4 109 45.9
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 2.3e-11 72.4 105 44.8
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 4.0e-11 71.6 105 44.8
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 4.0e-11 71.6 89 50.6
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 4.0e-11 71.6 109 41.3
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.2e-11 71.2 109 45.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.2e-11 71.2 109 44.0
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 5.2e-11 71.2 86 48.8
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 5.2e-11 71.2 85 49.4
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 6.8e-11 70.9 87 43.7
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 6.8e-11 70.9 105 43.8
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 6.8e-11 70.9 86 47.7
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 8.9e-11 70.5 105 44.8
A10p30170 Brassica napus HOM05D008756 ORTHO05D000925 8.9e-11 70.5 61 65.6
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.9e-11 70.5 109 44.0
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 8.9e-11 70.5 104 46.2
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 8.9e-11 70.5 100 42.0
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 8.9e-11 70.5 86 51.2
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.2e-10 70.1 85 54.1
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.2e-10 70.1 104 44.2
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.2e-10 70.1 86 45.3
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.2e-10 70.1 85 49.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.5e-10 69.7 87 46.0
C09p70580 Brassica napus HOM05D008756 ORTHO05D000925 2.0e-10 69.3 61 63.9
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 2.6e-10 68.9 87 44.8
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 3.4e-10 68.6 86 46.5
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 3.4e-10 68.6 86 46.5
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 4.4e-10 68.2 96 43.8
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 4.4e-10 68.2 109 41.3
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 5.8e-10 67.8 109 43.1
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 7.6e-10 67.4 87 41.4
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.6e-10 67.4 108 43.5
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 7.6e-10 67.4 105 41.0
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 9.9e-10 67.0 109 42.2
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-09 66.6 90 46.7
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.7e-09 66.2 105 41.9
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.7e-09 66.2 86 43.0
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 2.2e-09 65.9 91 46.2
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.2e-09 65.9 101 40.6
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.2e-09 65.9 108 43.5
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 2.9e-09 65.5 86 45.3
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.9e-09 65.5 95 40.0
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.9e-09 65.5 95 40.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 2.9e-09 65.5 86 43.0
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.9e-09 65.5 102 39.2
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 3.8e-09 65.1 109 40.4
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 3.8e-09 65.1 105 39.0
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.8e-09 65.1 87 48.3
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.8e-09 65.1 112 42.0
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 6.4e-09 64.3 86 44.2
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 6.4e-09 64.3 91 39.6
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 6.4e-09 64.3 87 42.5
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 8.4e-09 63.9 90 44.4
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 8.4e-09 63.9 86 47.7
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 8.4e-09 63.9 122 40.2
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.1e-08 63.5 90 43.3
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.1e-08 63.5 88 46.6
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.1e-08 63.5 109 42.2
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.1e-08 63.5 87 42.5
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.1e-08 63.5 82 42.7
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 1.1e-08 63.5 82 40.2
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.4e-08 63.2 90 43.3
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-08 63.2 85 47.1
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-08 63.2 85 47.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.9e-08 62.8 90 44.4
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-08 62.8 85 47.1
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.9e-08 62.8 87 43.7
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.9e-08 62.8 86 44.2
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.4e-08 62.4 96 44.8
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.4e-08 62.4 101 43.6
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.4e-08 62.4 96 44.8
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 3.2e-08 62.0 88 44.3
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 3.2e-08 62.0 96 44.8
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 3.2e-08 62.0 101 42.6
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 3.2e-08 62.0 96 44.8
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 4.1e-08 61.6 88 45.5
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 4.1e-08 61.6 88 45.5
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 4.1e-08 61.6 101 42.6
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.4e-08 61.2 85 45.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 7.1e-08 60.8 102 46.1
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 7.1e-08 60.8 103 40.8
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 7.1e-08 60.8 87 42.5
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-07 60.1 88 43.2
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.2e-07 60.1 99 39.4
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.6e-07 59.7 105 36.2
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.1e-07 59.3 78 43.6
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-07 59.3 86 43.0
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.1e-07 59.3 122 41.0
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 2.7e-07 58.9 105 33.3
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.7e-07 58.9 105 33.3
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.7e-07 58.9 105 33.3
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 2.7e-07 58.9 92 43.5
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.7e-07 58.9 103 38.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 3.5e-07 58.5 90 40.0
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.5e-07 58.5 104 37.5
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 3.5e-07 58.5 85 42.4
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 4.6e-07 58.2 90 42.2
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.6e-07 58.2 102 35.3
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 7.8e-07 57.4 125 36.8
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.0e-06 57.0 86 46.5
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 1.7e-06 56.2 102 41.2
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 3.0e-06 55.5 86 38.4
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 3.9e-06 55.1 82 39.0
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 5.1e-06 54.7 87 40.2
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 6.6e-06 54.3 87 36.8


User provided reference genes

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