Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G15790 Arabidopsis lyrata HOM05D000027 ORTHO05D080854 1.1e-80 303.1 147 100.0
AL6G15810 Arabidopsis lyrata HOM05D000027 ORTHO05D000500 3.7e-31 138.7 81 86.4
AT5G05890 Arabidopsis thaliana HOM05D000027 ORTHO05D000500 1.2e-29 133.7 81 85.2
Carub.0006s0478 Capsella rubella HOM05D000027 ORTHO05D000500 9.4e-27 124.0 79 77.2
AT5G05900 Arabidopsis thaliana HOM05D000027 ORTHO05D000500 1.2e-26 123.6 111 59.5
Carub.0006s0479 Capsella rubella HOM05D000027 ORTHO05D000500 4.0e-25 118.6 111 57.7
CARHR207340 Cardamine hirsuta HOM05D000027 ORTHO05D000500 4.8e-23 111.7 82 68.3
C09p70920 Brassica napus HOM05D000027 ORTHO05D000500 1.8e-22 109.8 110 55.5
BolC9t59855H Brassica oleracea HOM05D000027 ORTHO05D000500 1.8e-22 109.8 110 55.5
Sp6g37010 Schrenkiella parvula HOM05D000027 ORTHO05D000500 2.4e-22 109.4 110 55.5
AL6G15820 Arabidopsis lyrata HOM05D000027 ORTHO05D000500 5.9e-21 104.8 111 53.2
Thhalv10015913m.g Eutrema salsugineum HOM05D000027 ORTHO05D000500 5.9e-21 104.8 81 65.4
Thhalv10013508m.g Eutrema salsugineum HOM05D000027 ORTHO05D000500 1.7e-20 103.2 109 55.0
Sp6g37020 Schrenkiella parvula HOM05D000027 ORTHO05D000500 1.7e-20 103.2 114 50.9
BcaC06g32596 Brassica carinata HOM05D000027 ORTHO05D000500 2.9e-20 102.4 111 53.2
C09p70900 Brassica napus HOM05D000027 ORTHO05D000500 2.9e-20 102.4 81 64.2
CARHR207330 Cardamine hirsuta HOM05D000027 ORTHO05D000500 6.6e-20 101.3 73 64.4
AT5G05880 Arabidopsis thaliana HOM05D000027 ORTHO05D000500 2.8e-18 95.9 74 62.2
BcaC06g32597 Brassica carinata HOM05D000027 ORTHO05D000500 3.6e-18 95.5 81 63.0
BcaC06g32299 Brassica carinata HOM05D000027 ORTHO05D000500 8.0e-18 94.4 103 51.5
C09p70930 Brassica napus HOM05D000027 ORTHO05D000500 8.0e-18 94.4 103 51.5
BolC9t59852H Brassica oleracea HOM05D000027 ORTHO05D000500 8.0e-18 94.4 72 65.3
BolC9t59857H Brassica oleracea HOM05D000027 ORTHO05D000500 8.0e-18 94.4 103 51.5
C09p70940 Brassica napus HOM05D000027 ORTHO05D000500 2.3e-17 92.8 112 50.0
BolC9t59856H Brassica oleracea HOM05D000027 ORTHO05D000500 2.3e-17 92.8 82 62.2
BolC9t59858H Brassica oleracea HOM05D000027 ORTHO05D000500 2.3e-17 92.8 112 50.0
BraA10t45086Z Brassica rapa HOM05D000027 ORTHO05D000500 3.0e-17 92.4 122 47.5
C09p70910 Brassica napus HOM05D000027 ORTHO05D000500 6.8e-17 91.3 112 50.9
BolC9t59853H Brassica oleracea HOM05D000027 ORTHO05D000500 6.8e-17 91.3 112 50.9
BcaNung05968 Brassica carinata HOM05D000027 ORTHO05D000500 8.9e-17 90.9 78 62.8
Thhalv10013500m.g Eutrema salsugineum HOM05D000027 ORTHO05D000500 1.2e-16 90.5 82 54.9
BcaC06g32298 Brassica carinata HOM05D000027 ORTHO05D000500 1.5e-16 90.1 107 50.5
A10p30460 Brassica napus HOM05D000027 ORTHO05D000500 2.6e-16 89.4 105 48.6
BraA10t45089Z Brassica rapa HOM05D000027 ORTHO05D000500 2.6e-16 89.4 105 48.6
A10p30450 Brassica napus HOM05D000027 ORTHO05D000500 3.4e-16 89.0 78 59.0
AT5G05870 Arabidopsis thaliana HOM05D000027 ORTHO05D000500 4.4e-16 88.6 82 48.8
Aa31LG11G6900 Aethionema arabicum HOM05D000027 ORTHO05D000500 7.5e-16 87.8 74 58.1
AL6G15780 Arabidopsis lyrata HOM05D000027 ORTHO05D000500 7.5e-16 87.8 82 48.8
BraA10t45088Z Brassica rapa HOM05D000027 ORTHO05D000500 7.5e-16 87.8 111 49.5
A03p02470 Brassica napus HOM05D000027 ORTHO05D000500 9.8e-16 87.4 111 46.8
BraA03t09608Z Brassica rapa HOM05D000027 ORTHO05D000500 9.8e-16 87.4 111 46.8
C03p02800 Brassica napus HOM05D000027 ORTHO05D000500 1.3e-15 87.0 112 48.2
BolC3t12835H Brassica oleracea HOM05D000027 ORTHO05D000500 1.3e-15 87.0 112 48.2
CARHR207350 Cardamine hirsuta HOM05D000027 ORTHO05D000500 2.2e-15 86.3 82 50.0
CARHR194090 Cardamine hirsuta HOM05D000027 ORTHO05D000500 2.8e-15 85.9 74 59.5
BraA10t45091Z Brassica rapa HOM05D000027 ORTHO05D000500 7.0e-14 81.3 74 51.4
Carub.0006s0477 Capsella rubella HOM05D000027 ORTHO05D000500 7.0e-14 81.3 80 52.5
BcaNung05966 Brassica carinata HOM05D000027 ORTHO05D000500 9.2e-14 80.9 74 51.4
A10p30490 Brassica napus HOM05D000027 ORTHO05D000500 9.2e-14 80.9 74 50.0
Aa31LG11G6870 Aethionema arabicum HOM05D000027 ORTHO05D000500 2.7e-13 79.3 82 46.3
AL6G15770 Arabidopsis lyrata HOM05D000027 ORTHO05D000500 2.7e-13 79.3 74 51.4
Sp6g37040 Schrenkiella parvula HOM05D000027 ORTHO05D000500 3.5e-13 79.0 74 51.4
Sp6g37030 Schrenkiella parvula HOM05D000027 ORTHO05D000500 1.0e-12 77.4 76 46.1
Carub.0006s0476 Capsella rubella HOM05D000027 ORTHO05D000500 1.3e-12 77.0 77 45.5
BcaNung05967 Brassica carinata HOM05D000027 ORTHO05D000500 1.7e-12 76.6 81 50.6
BcaC06g32296 Brassica carinata HOM05D000027 ORTHO05D000500 2.3e-12 76.3 74 48.6
C09p70960 Brassica napus HOM05D000027 ORTHO05D000500 2.9e-12 75.9 74 48.6
BolC9t59860H Brassica oleracea HOM05D000027 ORTHO05D000500 2.9e-12 75.9 74 48.6
Thhalv10013513m.g Eutrema salsugineum HOM05D000027 ORTHO05D000500 2.9e-12 75.9 74 48.6
AT5G05860 Arabidopsis thaliana HOM05D000027 ORTHO05D000500 3.8e-12 75.5 74 47.3
BcaC06g32297 Brassica carinata HOM05D000027 ORTHO05D000500 3.8e-12 75.5 78 52.6
THA.LOC104826860 Tarenaya hassleriana HOM05D000027 ORTHO05D000500 6.6e-12 74.7 71 50.7
BraA10t45090Z Brassica rapa HOM05D000027 ORTHO05D000500 8.6e-12 74.3 78 51.3
C09p70950 Brassica napus HOM05D000027 ORTHO05D000500 1.1e-11 73.9 78 51.3
BolC9t59859H Brassica oleracea HOM05D000027 ORTHO05D000500 1.1e-11 73.9 78 51.3
A10p30480 Brassica napus HOM05D000027 ORTHO05D000500 3.3e-11 72.4 74 50.0
CARHR207360 Cardamine hirsuta HOM05D000027 ORTHO05D000500 4.7e-10 68.6 74 47.3
Cfa001391 Carpinus fangiana HOM05D000027 ORTHO05D000500 6.4e-07 58.2 77 40.3
Actinidia13896 Actinidia chinensis HOM05D000027 ORTHO05D000500 1.1e-06 57.4 71 42.3
MD07G1208800 Malus domestica HOM05D000027 ORTHO05D000500 1.4e-06 57.0 81 42.0
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 1.9e-06 56.6 71 43.7
Hma1.2p1_0026F.1_g016680 Hydrangea macrophylla HOM05D000027 ORTHO05D000500 1.9e-06 56.6 104 33.7
Dinv34445 Davidia involucrata HOM05D000027 ORTHO05D000500 2.4e-06 56.2 72 43.1
COL.COLO4_25584 Corchorus olitorius HOM05D000027 ORTHO05D000500 7.0e-06 54.7 81 42.0
FAN08G2482 Fragaria x ananassa HOM05D000027 ORTHO05D007845 7.0e-06 54.7 71 38.0
Actinidia02378 Actinidia chinensis HOM05D000027 ORTHO05D000500 9.2e-06 54.3 75 38.7
Cc09_g08130 Coffea canephora HOM05D000027 ORTHO05D000500 9.2e-06 54.3 73 39.7
Dinv16286 Davidia involucrata HOM05D000027 ORTHO05D000500 9.2e-06 54.3 71 42.3


User provided reference genes

Program Settings