Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 0.0e+00 1219.5 623 100.0
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 0.0e+00 1106.7 633 89.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.1e-281 973.0 626 81.9
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.4e-268 929.5 588 81.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 5.8e-259 897.5 625 76.5
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 4.1e-257 891.3 625 76.6
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 7.1e-257 890.6 624 76.0
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.6e-256 889.4 569 82.4
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.3e-252 875.5 663 72.2
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.6e-251 872.1 634 73.0
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.6e-240 836.3 623 72.7
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 9.9e-227 790.4 626 66.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.2e-210 736.1 629 64.7
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.8e-207 726.5 626 64.5
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.4e-206 721.1 627 63.6
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 5.0e-202 708.4 621 62.6
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 5.0e-202 708.4 621 62.6
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.4e-201 706.8 621 62.5
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.1e-198 697.2 622 61.9
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.1e-198 697.2 622 61.9
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.8e-197 691.8 623 61.5
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.1e-196 689.1 629 62.0
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.2e-185 652.5 681 55.4
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.0e-178 630.9 644 53.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.7e-178 630.2 631 54.4
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 8.5e-178 627.9 645 54.3
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.1e-177 627.5 638 53.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.2e-177 625.5 636 53.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.6e-176 623.6 649 54.4
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.7e-176 622.1 645 53.3
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.1e-176 621.7 624 53.5
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 8.0e-176 621.3 628 52.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.0e-175 619.0 624 53.7
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 5.2e-175 618.6 642 53.9
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 8.8e-175 617.8 634 54.1
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 4.4e-174 615.5 645 53.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 7.5e-174 614.8 382 83.8
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.2e-173 613.2 651 53.0
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.4e-172 610.5 640 52.2
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.4e-172 610.5 625 53.0
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.8e-172 610.1 615 53.7
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.4e-172 608.6 651 51.8
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.5e-171 605.9 651 53.3
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 4.5e-171 605.5 638 51.6
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.7e-170 603.6 645 52.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 2.9e-170 602.8 640 51.1
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.5e-169 600.5 634 53.0
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.5e-169 599.7 618 53.6
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 3.2e-169 599.4 638 52.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 3.2e-169 599.4 642 50.9
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 4.2e-169 599.0 644 50.9
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 7.2e-169 598.2 617 52.2
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.1e-168 596.7 632 52.1
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 4.7e-168 595.5 627 51.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 4.7e-168 595.5 650 51.1
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.0e-167 594.3 679 49.5
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.3e-167 593.2 646 51.9
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.3e-167 593.2 617 52.7
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 6.8e-167 591.7 643 52.6
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 6.8e-167 591.7 639 51.6
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.7e-165 587.0 637 49.9
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 2.2e-165 586.6 638 52.4
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 1.8e-164 583.6 640 50.8
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 5.4e-164 582.0 627 50.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.6e-163 580.5 637 51.6
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.7e-163 579.7 638 50.0
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.7e-163 579.7 615 51.1
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 5.9e-163 578.6 638 50.0
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 7.7e-163 578.2 624 51.0
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 7.7e-163 578.2 635 51.2
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.0e-162 575.5 689 48.5
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.6e-160 570.5 639 49.1
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 4.7e-160 568.9 634 51.4
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.0e-160 568.2 627 50.2
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.4e-159 567.4 578 54.3
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.4e-159 567.4 652 50.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 4.0e-159 565.8 609 51.2
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 8.9e-159 564.7 607 51.4
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.5e-158 563.9 641 49.5
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.0e-158 563.5 645 47.8
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.7e-157 560.5 646 49.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.2e-157 560.1 652 48.8
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.2e-157 560.1 645 49.9
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.9e-157 559.7 633 50.6
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.4e-156 555.4 598 52.2
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.7e-154 550.4 492 59.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 6.6e-154 548.5 543 53.4
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 8.6e-154 548.1 648 50.0
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.3e-153 546.2 668 48.2
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 7.3e-153 545.0 630 48.6
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 9.5e-153 544.7 619 49.8
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 9.5e-153 544.7 643 48.4
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.6e-152 543.9 624 48.9
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.7e-152 542.3 626 47.9
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 4.7e-152 542.3 583 53.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.0e-151 541.2 568 52.1
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 4.0e-151 539.3 621 48.3
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.2e-150 537.7 581 50.1
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.5e-150 537.3 622 49.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.4e-150 536.2 625 48.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 4.9e-149 532.3 527 54.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.1e-148 531.2 477 63.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.4e-148 530.8 627 47.7
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.0e-147 526.9 592 49.8
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.7e-147 526.6 548 53.6
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.5e-145 520.8 614 47.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.1e-144 516.9 633 44.7
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.4e-143 514.2 600 48.5
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 5.2e-143 512.3 624 48.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 6.8e-143 511.9 632 46.5
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.5e-142 510.8 596 49.3
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.0e-142 510.4 600 48.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.0e-142 510.4 637 45.4
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.0e-138 496.5 710 44.2
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 8.6e-138 495.0 496 54.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.5e-137 494.2 509 51.5
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.6e-137 492.3 654 47.6
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.2e-136 491.1 567 49.0
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.4e-135 487.6 488 54.1
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 3.1e-135 486.5 523 52.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.4e-132 477.6 479 52.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.4e-132 475.7 524 48.5
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 5.6e-129 465.7 524 48.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 6.9e-127 458.8 618 43.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.6e-126 456.8 626 43.8
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 9.6e-121 438.3 541 47.5
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.5e-113 414.5 486 48.4
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 7.4e-113 412.1 603 42.3
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 6.2e-112 409.1 620 41.5
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.0e-111 405.2 422 51.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.0e-111 405.2 470 46.8
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.0e-111 405.2 470 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.4e-108 397.1 513 44.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 5.6e-105 386.0 510 45.9
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.4e-105 385.6 546 43.0
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.7e-96 356.7 634 39.9
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.8e-85 320.1 637 36.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.7e-72 278.1 506 36.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.7e-72 278.1 669 32.1
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.3e-56 223.0 361 38.2
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.5e-52 211.1 421 32.8
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.8e-51 207.6 289 43.9
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 5.0e-45 186.8 195 46.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.4e-34 152.1 113 64.6
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.9e-23 115.2 186 37.1
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 4.3e-20 104.0 64 71.9
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.1e-15 89.4 162 37.0
CARHR207570 Cardamine hirsuta HOM05D004604 ORTHO05D116251 2.8e-11 74.7 73 54.8
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-08 65.5 64 50.0


User provided reference genes

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