Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 8.5e-154 547.0 276 100.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 7.0e-140 500.7 276 91.3
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.6e-139 499.6 276 90.9
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 4.1e-132 474.9 277 89.5
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 8.5e-130 467.2 274 86.9
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 6.8e-127 457.6 276 85.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 7.7e-123 444.1 275 83.6
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.3e-122 442.6 275 82.9
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.9e-122 442.2 275 83.3
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 8.9e-119 430.6 277 81.6
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.4e-116 423.3 258 84.5
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.8e-116 422.9 274 78.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 9.8e-110 400.6 276 72.5
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.1e-96 356.3 276 64.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 2.0e-94 349.7 253 68.0
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 3.4e-94 349.0 276 63.0
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 4.4e-94 348.6 277 63.9
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 4.4e-94 348.6 276 63.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 5.8e-94 348.2 277 64.3
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 7.5e-94 347.8 272 63.6
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 2.9e-93 345.9 276 62.7
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 8.3e-93 344.4 276 62.3
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-92 344.0 253 68.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.4e-92 342.8 212 84.9
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 2.4e-92 342.8 277 61.7
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.4e-92 342.8 278 64.0
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.2e-92 342.4 253 68.4
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 9.2e-92 340.9 252 66.3
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.2e-91 340.5 252 66.7
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 3.5e-91 339.0 234 70.5
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.8e-91 337.8 253 67.6
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.3e-90 337.0 253 67.6
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.3e-90 337.0 253 68.0
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.3e-90 337.0 253 68.0
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 3.0e-90 335.9 263 63.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.9e-90 335.5 253 67.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.9e-90 335.5 276 60.9
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.6e-90 334.7 253 66.8
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 8.6e-90 334.3 276 60.9
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.1e-89 334.0 263 63.9
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.1e-89 334.0 234 70.9
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.9e-89 333.2 255 62.7
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.9e-89 333.2 242 64.9
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.5e-89 332.8 273 60.4
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 2.5e-89 332.8 276 61.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.3e-89 332.4 207 78.3
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.3e-89 331.3 276 60.1
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 7.3e-89 331.3 265 63.0
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 7.3e-89 331.3 251 64.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.6e-88 330.1 241 65.6
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.1e-88 329.7 257 61.9
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.4e-87 327.0 265 62.6
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.8e-87 326.6 268 60.8
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.8e-87 326.6 273 60.1
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.8e-87 326.6 276 59.8
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 3.1e-87 325.9 232 67.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 4.0e-87 325.5 238 66.8
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 4.0e-87 325.5 276 59.4
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 6.8e-87 324.7 273 60.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 8.9e-87 324.3 273 60.8
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 8.9e-87 324.3 276 59.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.6e-86 322.8 240 67.5
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.6e-86 322.8 272 61.0
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.6e-86 322.8 277 58.8
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 3.4e-86 322.4 249 65.9
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 7.6e-86 321.2 204 76.0
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 7.6e-86 321.2 253 63.6
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.7e-85 320.1 205 75.1
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.2e-85 319.7 274 59.1
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.9e-85 319.3 214 71.5
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.9e-85 319.3 277 59.6
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.9e-85 318.5 266 60.9
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 4.9e-85 318.5 240 65.0
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 6.4e-85 318.2 234 65.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 6.4e-85 318.2 240 65.8
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.4e-85 317.8 249 64.3
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 8.4e-85 317.8 213 71.8
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 8.4e-85 317.8 230 66.1
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.1e-84 317.4 228 69.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 5.4e-84 315.1 235 67.2
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 5.4e-84 315.1 243 65.4
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 7.1e-84 314.7 236 66.9
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.1e-84 314.7 234 66.7
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 2.1e-83 313.2 240 63.8
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.1e-83 313.2 234 66.2
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.5e-83 312.4 266 60.9
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 4.6e-83 312.0 230 65.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.8e-83 311.2 207 72.5
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.3e-82 310.5 234 65.8
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-82 310.1 275 57.5
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.7e-82 310.1 205 74.1
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.3e-82 309.7 237 65.4
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 8.7e-82 307.8 223 66.8
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.5e-81 307.0 241 63.5
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 3.3e-81 305.8 234 63.2
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 5.6e-81 305.1 250 61.6
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 5.6e-81 305.1 276 56.2
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 7.3e-81 304.7 230 66.1
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.1e-80 303.1 207 71.5
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 2.8e-80 302.8 216 67.6
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 8.1e-80 301.2 223 66.4
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.8e-79 300.1 250 61.2
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 4.0e-79 298.9 199 79.9
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.5e-75 285.8 245 58.4
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 5.1e-74 282.0 278 54.7
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 6.6e-74 281.6 241 56.4
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.7e-74 281.2 220 65.0
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.7e-74 281.2 204 69.6
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.5e-73 280.4 233 58.4
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.1e-72 276.6 196 69.9
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.4e-71 273.1 270 54.4
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 4.0e-71 272.3 218 60.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.4e-70 269.2 245 59.6
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.3e-69 267.3 206 62.1
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.1e-67 260.0 215 57.7
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.9e-65 253.4 212 61.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.8e-64 249.6 188 64.9
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.4e-60 237.3 211 54.5
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.8e-58 230.3 258 46.1
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.9e-57 226.9 209 51.7
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.1e-55 221.1 182 65.4
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.3e-53 214.2 243 46.1
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.9e-52 210.3 212 49.5
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 5.5e-52 208.8 221 51.6
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.3e-49 199.1 169 62.7
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 3.4e-46 189.5 246 38.2
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 7.2e-44 181.8 130 65.4
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.2e-43 181.0 213 44.1
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.4e-39 167.5 109 76.1
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 9.1e-31 138.3 117 63.2
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 5.0e-29 132.5 107 65.4
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 8.0e-27 125.2 130 52.3
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.0e-22 110.5 91 60.4
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.9e-20 104.0 88 63.6
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 7.2e-20 102.1 144 38.9
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.2e-14 84.7 95 49.5
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 2.7e-14 83.6 83 54.2
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.3e-13 81.3 246 31.3
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 4.1e-07 59.7 58 55.2
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 2.0e-06 57.4 60 50.0


User provided reference genes

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