Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1420.6 685 100.0
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1342.0 681 94.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1302.7 685 91.5
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1241.1 683 86.8
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1237.2 685 86.4
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1223.4 671 87.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1209.9 685 84.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 0.0e+00 1195.3 685 83.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1194.1 685 83.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 0.0e+00 1194.1 685 82.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1194.1 685 83.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 0.0e+00 1189.9 686 82.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.3e-301 1039.3 672 74.3
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.5e-300 1035.8 667 75.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.1e-298 1029.6 664 74.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-297 1025.8 682 73.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.9e-297 1023.8 678 73.3
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.3e-296 1022.7 678 72.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-294 1015.0 665 74.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 9.7e-292 1006.5 671 72.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-290 1002.3 668 73.7
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 4.2e-287 991.1 683 71.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.0e-277 958.0 669 70.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.1e-266 920.2 667 68.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-257 892.9 666 66.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.2e-234 813.9 695 57.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.2e-230 803.5 680 57.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.8e-230 802.4 685 56.4
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 4.0e-229 798.5 684 56.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 5.2e-229 798.1 682 56.5
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.0e-228 796.2 686 55.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.2e-227 792.7 717 54.3
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.4e-226 790.0 681 55.9
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.4e-226 788.1 688 56.0
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 5.4e-226 788.1 690 55.8
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.2e-225 786.9 668 55.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.1e-225 786.2 671 55.9
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.3e-224 783.5 656 57.8
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.3e-224 783.5 661 57.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-224 783.1 671 55.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.7e-224 783.1 672 56.1
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 5.1e-224 781.6 652 57.1
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.6e-224 781.2 673 56.5
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-223 780.4 678 57.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.5e-223 780.0 668 56.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.3e-223 778.9 662 56.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 4.3e-223 778.5 669 56.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.8e-222 775.8 662 56.3
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.6e-222 775.4 665 57.1
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 6.2e-222 774.6 658 57.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.4e-221 773.5 671 55.1
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.4e-221 773.5 684 54.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.8e-221 773.1 681 54.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.1e-221 772.3 689 54.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 4.0e-221 771.9 679 55.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-220 770.4 707 54.0
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.6e-220 769.2 690 54.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 9.9e-220 767.3 675 55.0
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.9e-220 767.3 681 54.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.3e-219 766.9 672 56.0
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.8e-219 765.4 686 54.1
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.8e-219 765.4 666 55.6
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.4e-219 764.2 687 54.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-218 763.8 687 53.4
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.1e-218 763.8 691 54.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.9e-218 763.1 690 53.6
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.4e-218 762.7 666 56.3
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.2e-218 762.3 681 54.2
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 5.4e-218 761.5 692 52.7
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 9.3e-218 760.8 686 54.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.2e-217 760.4 709 51.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-217 760.4 699 52.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.6e-217 760.0 662 54.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.6e-217 760.0 720 52.1
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 4.6e-217 758.4 728 51.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 6.0e-217 758.1 698 54.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.0e-217 758.1 711 52.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.3e-216 756.9 686 54.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.1e-214 749.6 686 53.6
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 6.2e-214 748.0 674 54.6
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.8e-213 746.5 682 54.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.4e-213 746.1 677 53.2
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.0e-213 745.3 661 54.8
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 4.0e-213 745.3 683 53.3
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.0e-212 743.0 724 51.0
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.6e-212 742.7 677 53.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.8e-211 738.8 667 53.5
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.9e-211 738.4 672 53.6
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.1e-210 737.3 669 53.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.4e-210 736.1 678 53.1
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.4e-210 736.1 661 54.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 8.7e-208 727.6 688 50.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.9e-207 726.5 674 53.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.5e-207 726.1 677 52.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.3e-206 723.8 680 53.1
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.1e-205 720.7 675 52.1
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 9.0e-205 717.6 696 52.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.2e-204 717.2 674 52.2
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-204 715.3 684 52.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.9e-202 709.9 672 51.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.9e-201 704.5 841 46.1
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.3e-200 703.0 676 51.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.3e-199 699.1 621 55.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.6e-198 696.8 625 54.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 8.2e-198 694.5 611 54.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.8e-197 693.3 678 51.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 5.5e-194 681.8 665 51.4
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.9e-193 677.9 682 50.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.3e-191 672.5 689 49.5
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.2e-190 669.8 665 50.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.7e-190 669.1 676 50.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.4e-189 666.4 722 48.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.9e-189 664.8 688 49.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.2e-188 664.1 600 53.7
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.3e-187 660.6 635 52.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-186 657.1 726 47.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.6e-185 652.5 666 50.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 7.9e-185 651.4 738 44.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 8.8e-184 647.9 679 48.6
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.6e-180 636.3 666 49.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.0e-179 634.4 591 52.3
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.1e-177 625.2 663 49.2
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 4.8e-174 615.5 676 47.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-167 594.3 690 45.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.6e-167 593.2 676 45.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.9e-162 577.0 451 65.0
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 3.6e-161 572.8 676 44.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.8e-158 563.1 539 50.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.4e-157 560.8 675 44.3
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 7.0e-157 558.5 658 46.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-152 543.1 325 77.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.7e-150 537.3 532 49.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.3e-144 516.9 560 47.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.7e-139 500.7 426 55.2
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.2e-134 483.8 540 46.3
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 9.2e-125 451.8 383 58.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.4e-109 399.4 289 63.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.4e-101 372.9 463 42.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-95 355.1 230 71.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.7e-92 344.0 370 53.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.6e-89 334.7 313 49.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 5.3e-88 329.7 567 35.1
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.5e-85 320.9 553 34.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.3e-83 314.3 404 40.8
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.2e-79 302.0 585 33.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 7.6e-79 299.3 391 40.2
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 5.1e-75 286.6 239 62.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 5.0e-70 270.0 157 81.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 7.4e-66 256.1 242 57.9
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.1e-58 232.3 156 69.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 5.5e-53 213.4 223 52.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 8.8e-51 206.1 336 36.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-50 204.5 139 66.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-47 195.7 225 47.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-43 179.5 99 82.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-43 179.5 99 82.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-43 179.5 99 82.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.7e-41 174.1 117 65.8
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.0e-39 168.3 120 60.8
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.8e-38 164.1 242 37.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 9.8e-26 122.9 182 36.8
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.2e-25 121.7 216 32.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-23 113.6 135 40.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.3e-19 101.7 59 76.3
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.4e-17 93.6 71 57.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-15 89.4 268 28.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.5e-13 82.4 48 75.0
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.5e-13 82.4 48 75.0
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.5e-13 82.4 73 63.0
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.7e-12 77.4 205 29.8
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 5.2e-11 73.9 148 32.4
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.2e-09 68.6 224 27.2
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 1.2e-07 62.8 44 65.9


User provided reference genes

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