Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.1e-104 383.3 189 100.0
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 2.0e-93 345.9 189 90.5
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 7.0e-83 310.8 189 83.6
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 7.2e-80 300.8 190 81.6
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 2.6e-77 292.4 189 79.9
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 2.5e-72 275.8 193 75.6
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 1.2e-71 273.5 184 76.6
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 4.7e-71 271.6 192 74.5
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 2.0e-69 266.2 184 76.6
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 3.4e-69 265.4 184 75.5
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 3.4e-69 265.4 192 74.0
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 2.2e-68 262.7 184 74.5
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 4.6e-66 255.0 175 76.0
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 1.5e-61 240.0 142 82.4
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 2.5e-56 222.6 175 68.6
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 6.9e-38 161.4 178 49.4
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 2.7e-34 149.4 171 48.5
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 6.0e-34 148.3 182 47.3
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 5.1e-33 145.2 177 48.0
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 8.7e-33 144.4 182 46.2
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 2.4e-30 136.3 184 43.5
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 6.9e-30 134.8 180 43.3
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 1.5e-29 133.7 187 43.3
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 7.6e-29 131.3 178 44.9
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 1.7e-28 130.2 187 41.2
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 4.9e-28 128.6 178 41.6
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 8.4e-28 127.9 161 46.0
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 8.4e-28 127.9 171 43.9
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.1e-27 127.5 177 45.2
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 5.4e-27 125.2 182 41.8
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 2.1e-26 123.2 81 75.3
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 2.1e-26 123.2 160 42.5
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 3.5e-26 122.5 81 75.3
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 3.5e-26 122.5 81 75.3
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 5.1e-25 118.6 180 38.9
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 5.1e-25 118.6 182 38.5
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 8.7e-25 117.9 177 42.9
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 1.1e-24 117.5 195 37.9
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 5.6e-24 115.2 158 40.5
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 7.4e-24 114.8 177 40.1
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 9.6e-24 114.4 187 38.5
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 1.6e-23 113.6 151 44.4
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 1.6e-23 113.6 164 40.9
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 2.1e-23 113.2 186 38.7
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 2.8e-23 112.8 163 44.2
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 3.7e-23 112.5 151 43.7
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 3.7e-23 112.5 178 39.9
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 3.7e-23 112.5 176 38.6
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 4.8e-23 112.1 165 39.4
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 2.4e-22 109.8 189 37.0
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 3.1e-22 109.4 181 41.4
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 9.0e-22 107.8 148 42.6
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 1.2e-21 107.5 185 40.0
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 1.5e-21 107.1 161 41.6
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 2.0e-21 106.7 175 40.0
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 2.0e-21 106.7 159 42.1
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 5.8e-21 105.1 155 41.3
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 9.9e-21 104.4 157 40.8
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 4.9e-20 102.1 176 38.6
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 8.4e-20 101.3 177 40.1
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 8.4e-20 101.3 153 39.2
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.1e-19 100.9 154 40.9
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 9.3e-19 97.8 205 33.7
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 2.1e-18 96.7 173 37.6
A08p12840 Brassica napus HOM05D007902 ORTHO05D009839 2.7e-18 96.3 92 57.6
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 7.9e-18 94.7 172 41.3
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 7.9e-18 94.7 209 33.5
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 3.0e-17 92.8 185 37.3
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 6.7e-17 91.7 65 67.7
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.5e-16 89.7 192 33.3
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 9.6e-16 87.8 178 37.1
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 9.6e-16 87.8 83 59.0
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 1.4e-14 84.0 83 48.2
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 3.1e-14 82.8 155 36.8
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 3.1e-14 82.8 122 40.2
A10p30870 Brassica napus HOM05D000044 ORTHO05D000051 5.3e-14 82.0 71 63.4
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 9.0e-14 81.3 159 35.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.2e-13 80.9 146 34.2
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.2e-13 80.9 159 35.2
BolC4t25019H Brassica oleracea HOM05D000108 ORTHO05D012076 4.5e-13 79.0 50 68.0
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.2e-11 72.8 155 32.3
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 3.2e-11 72.8 152 33.6
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 5.5e-11 72.0 183 29.5
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 7.1e-11 71.6 151 30.5
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 9.3e-11 71.2 59 59.3
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 1.6e-10 70.5 147 35.4
BcaC02g09961 Brassica carinata HOM05D001334 ORTHO05D001119 4.6e-10 68.9 42 71.4
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 4.6e-10 68.9 183 27.3
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 6.1e-10 68.6 162 27.2
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 7.9e-10 68.2 183 26.2
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 1.3e-09 67.4 181 27.6
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 1.8e-09 67.0 179 29.6
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 1.8e-09 67.0 179 25.1
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 3.0e-09 66.2 172 24.4
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 3.0e-09 66.2 179 30.2
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 3.9e-09 65.9 160 25.6
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 3.9e-09 65.9 177 27.1
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 5.1e-09 65.5 181 29.3
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 5.1e-09 65.5 186 30.1
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 5.1e-09 65.5 181 27.6
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 6.7e-09 65.1 142 30.3
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 8.7e-09 64.7 178 26.4
BolC4t26224H Brassica oleracea HOM05D007902 ORTHO05D009839 1.5e-08 63.9 35 80.0
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 1.9e-08 63.5 177 29.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.5e-08 63.2 154 28.6
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 2.5e-08 63.2 189 27.0
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.5e-08 63.2 178 25.8
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 3.3e-08 62.8 185 27.0
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 3.3e-08 62.8 156 28.2
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 3.3e-08 62.8 188 24.5
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 4.3e-08 62.4 178 27.5
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 5.7e-08 62.0 177 27.1
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 5.7e-08 62.0 187 25.1
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 5.7e-08 62.0 189 25.4
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 5.7e-08 62.0 179 25.1
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 5.7e-08 62.0 171 26.9
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 7.4e-08 61.6 183 26.2
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 9.7e-08 61.2 171 27.5
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 9.7e-08 61.2 182 26.9
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 1.3e-07 60.8 182 26.9
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.6e-07 60.5 185 27.0
BolC4t23447H Brassica oleracea HOM05D013651 ORTHO05D013480 2.2e-07 60.1 107 36.4
BolC6t36021H Brassica oleracea HOM05D013651 ORTHO05D013480 2.2e-07 60.1 107 36.4
BolC7t44774H Brassica oleracea HOM05D013651 ORTHO05D013480 2.2e-07 60.1 107 36.4
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 2.2e-07 60.1 159 23.3
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 2.2e-07 60.1 184 25.0
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 2.8e-07 59.7 178 24.7
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 2.8e-07 59.7 183 25.1
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 2.8e-07 59.7 71 39.4
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 2.8e-07 59.7 71 39.4
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 2.8e-07 59.7 179 25.7
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.8e-07 59.7 175 27.4
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 3.7e-07 59.3 169 24.9
C04p34590 Brassica napus HOM05D000108 ORTHO05D012076 8.2e-07 58.2 37 67.6
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 8.2e-07 58.2 221 24.9
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 8.2e-07 58.2 174 26.4
BolC3t20084H Brassica oleracea HOM05D013651 ORTHO05D013480 1.1e-06 57.8 104 35.6
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 1.1e-06 57.8 208 29.3
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 1.1e-06 57.8 180 26.7
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.4e-06 57.4 159 25.2
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.4e-06 57.4 192 22.9
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 1.8e-06 57.0 169 26.0
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 1.8e-06 57.0 176 25.6
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 2.4e-06 56.6 210 29.0
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 2.4e-06 56.6 186 29.6
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.4e-06 56.6 159 26.4
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 3.1e-06 56.2 189 26.5
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 3.1e-06 56.2 181 25.4
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 3.1e-06 56.2 180 27.2
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 4.1e-06 55.8 182 24.7
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 5.3e-06 55.5 186 24.2
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 6.9e-06 55.1 177 23.2
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 6.9e-06 55.1 186 28.5


User provided reference genes

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