Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G14330 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 2.4e-37 158.3 78 100.0
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 4.1e-21 104.4 70 75.7
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 1.3e-19 99.4 71 74.6
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 2.9e-19 98.2 70 68.6
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 4.2e-18 94.4 65 75.4
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 8.0e-17 90.1 70 64.3
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 9.8e-15 83.2 70 64.3
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 2.9e-14 81.6 63 66.7
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 8.3e-14 80.1 70 61.4
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 8.3e-14 80.1 70 61.4
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 1.1e-13 79.7 70 61.4
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.4e-13 79.3 70 62.9
BcaB01g03126 Brassica carinata HOM05D022712 ORTHO05D003687 2.4e-13 78.6 65 63.1
BcaB01g04851 Brassica carinata HOM05D022712 ORTHO05D003687 2.4e-13 78.6 65 63.1
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 2.4e-13 78.6 70 60.0
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 2.4e-13 78.6 70 60.0
BcaB02g11261 Brassica carinata HOM05D022712 ORTHO05D003687 5.4e-13 77.4 63 61.9
BcaB04g17367 Brassica carinata HOM05D022712 ORTHO05D003687 7.8e-12 73.6 65 60.0
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 7.8e-12 73.6 65 63.1
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 8.0e-09 63.5 36 83.3
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 3.1e-08 61.6 59 57.6
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 3.1e-08 61.6 59 57.6
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 5.2e-08 60.8 66 53.0
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.2e-07 59.7 53 52.8
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.5e-07 59.3 50 54.0
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.5e-07 59.3 59 55.9
BcaB03g13865 Brassica carinata HOM05D001279 ORTHO05D001636 2.0e-07 58.9 36 77.8
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 3.4e-07 58.2 34 67.6
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 3.4e-07 58.2 34 67.6
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 5.8e-07 57.4 38 63.2
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 7.5e-07 57.0 35 65.7
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 7.5e-07 57.0 50 52.0
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 9.8e-07 56.6 37 70.3
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 9.8e-07 56.6 50 52.0
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 9.8e-07 56.6 35 68.6
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 9.8e-07 56.6 34 67.6
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 1.7e-06 55.8 34 70.6
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 1.7e-06 55.8 34 67.6
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 2.2e-06 55.5 34 64.7
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 3.7e-06 54.7 35 62.9
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 4.9e-06 54.3 35 62.9
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 6.4e-06 53.9 35 65.7
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.4e-06 53.9 35 65.7
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 6.4e-06 53.9 34 61.8
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 6.4e-06 53.9 34 67.6
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 8.3e-06 53.5 54 53.7
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 8.3e-06 53.5 35 62.9
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 8.3e-06 53.5 35 62.9
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 8.3e-06 53.5 35 62.9
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 8.3e-06 53.5 35 62.9
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 8.3e-06 53.5 35 65.7
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 8.3e-06 53.5 35 65.7


User provided reference genes

Program Settings