Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.4e-293 1012.3 524 100.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.1e-286 986.9 524 95.4
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 4.5e-281 970.7 524 95.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.3e-256 889.4 524 87.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 3.6e-254 881.3 524 86.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 4.7e-254 880.9 525 86.1
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-247 859.0 527 85.2
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.9e-247 859.0 527 85.2
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.1e-245 851.7 527 84.3
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.0e-245 851.3 526 84.4
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.2e-242 841.6 543 82.3
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-239 832.4 524 82.4
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 2.1e-238 828.9 524 82.3
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 6.2e-238 827.4 524 81.5
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.1e-237 825.1 524 82.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 9.5e-231 803.5 525 78.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 7.8e-217 757.3 507 79.1
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 8.4e-195 684.1 532 66.7
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.4e-194 683.3 526 67.7
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.9e-194 682.9 532 66.5
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 4.2e-194 681.8 526 67.5
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 5.5e-194 681.4 529 67.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 7.1e-194 681.0 529 66.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.0e-192 677.2 531 67.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.3e-192 676.8 529 66.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.7e-192 674.5 532 66.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.5e-191 673.3 529 66.7
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.5e-191 673.3 529 66.7
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.6e-190 669.8 531 66.1
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 6.3e-190 667.9 532 65.4
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.4e-189 666.0 530 65.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 9.0e-189 664.1 530 66.6
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.4e-188 662.1 539 65.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.2e-187 659.4 532 65.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.9e-187 659.1 531 64.8
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 5.0e-187 658.3 528 65.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 8.5e-187 657.5 552 63.8
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.5e-186 656.0 453 73.3
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 3.2e-186 655.6 528 66.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 3.2e-186 655.6 528 65.3
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.2e-186 655.2 528 66.1
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 5.5e-186 654.8 554 63.7
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 5.5e-186 654.8 526 64.6
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.6e-185 653.3 539 63.6
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.6e-185 652.1 530 65.1
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.1e-185 651.4 468 70.5
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 7.9e-185 651.0 528 66.3
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-184 650.2 527 64.9
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.3e-184 649.4 528 65.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.0e-184 649.0 534 63.5
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.0e-184 649.0 528 65.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.0e-184 649.0 482 68.5
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.9e-184 648.7 527 64.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.1e-184 648.3 452 72.3
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 5.1e-184 648.3 533 65.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.7e-184 647.5 528 64.4
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.9e-183 646.4 471 69.4
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.3e-183 645.2 541 63.8
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.8e-182 642.5 528 64.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.4e-181 640.2 434 74.2
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.4e-181 639.4 456 70.6
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.3e-181 638.3 477 69.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 9.1e-181 637.5 543 61.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.5e-180 636.7 532 63.7
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.4e-180 635.6 598 57.5
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 6.5e-179 631.3 528 64.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 8.5e-179 630.9 528 64.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.9e-178 629.8 526 63.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.2e-177 627.1 536 62.3
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.6e-177 626.7 529 63.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 3.6e-177 625.5 473 68.1
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 4.6e-177 625.2 479 66.2
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 6.1e-177 624.8 528 63.6
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.5e-175 620.2 434 72.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.7e-175 618.2 450 68.0
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.7e-174 616.7 514 62.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 4.1e-173 612.1 527 63.4
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 6.9e-173 611.3 434 72.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.0e-172 609.8 539 61.8
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 5.9e-172 608.2 532 58.8
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.2e-171 606.3 483 66.7
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 6.7e-168 594.7 481 63.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 8.8e-168 594.3 532 60.5
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.6e-167 592.8 405 73.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.3e-166 590.5 525 61.7
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.2e-166 589.7 463 63.9
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 9.1e-165 584.3 459 65.6
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.0e-160 570.9 548 58.6
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 9.7e-159 564.3 403 70.2
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.0e-157 558.1 411 67.4
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 9.1e-157 557.8 497 60.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.7e-155 553.5 806 43.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 7.2e-154 548.1 557 55.8
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-151 540.8 392 67.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.4e-151 539.3 393 68.2
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 4.4e-151 538.9 454 62.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.7e-148 529.6 453 62.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.5e-148 529.3 439 62.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.1e-146 524.2 490 58.0
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.2e-145 520.8 611 50.7
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 4.1e-141 505.8 488 57.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 8.6e-139 498.0 408 63.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 2.5e-138 496.5 409 67.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.6e-138 495.4 559 51.5
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 3.6e-137 492.7 366 69.9
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.2e-134 483.4 455 59.3
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.1e-133 481.1 452 57.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.1e-133 479.2 537 50.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-126 455.7 544 49.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 9.2e-125 451.4 486 49.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 7.5e-119 431.8 472 48.9
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-115 420.6 481 49.9
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.3e-115 420.2 473 49.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.6e-114 415.6 453 53.9
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.9e-110 403.3 344 63.4
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 9.0e-88 328.6 445 42.0
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 7.1e-85 318.9 437 42.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.0e-83 315.1 286 61.5
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 5.1e-83 312.8 215 70.7
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.6e-82 309.3 407 47.4
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 6.2e-81 305.8 526 36.7
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 5.3e-80 302.8 299 53.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-76 291.2 365 47.9
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 5.5e-69 266.2 159 83.0
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.5e-63 246.5 238 58.8
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 3.2e-53 213.8 187 62.0
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 8.0e-52 209.1 268 45.1
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 3.2e-45 187.2 265 43.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.2e-45 186.8 266 43.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.2e-44 185.3 158 60.1
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.0e-38 165.6 243 45.7
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.5e-37 161.8 236 45.3
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-36 158.3 241 43.6
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 3.6e-36 157.1 116 61.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 4.7e-36 156.8 126 69.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.8e-35 154.8 179 52.0
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-35 154.8 172 55.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.0e-34 151.4 260 39.2
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-33 148.7 120 64.2
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-33 148.7 171 52.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.7e-33 148.3 120 63.3
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-32 145.2 131 58.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 5.4e-32 143.3 102 64.7
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.6e-31 141.7 97 70.1
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.0e-27 129.0 116 56.0
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 9.8e-26 122.5 96 63.5
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.3e-25 119.4 140 47.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.8e-24 118.2 245 37.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.2e-23 115.5 138 50.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 4.5e-23 113.6 79 72.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.5e-21 108.6 231 36.4
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 5.6e-21 106.7 226 37.6
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.2e-20 105.5 87 63.2
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 5.8e-18 96.7 138 50.7
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 8.3e-17 92.8 94 51.1
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 6.6e-14 83.2 63 61.9
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.9e-13 81.6 132 31.8
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.5e-13 81.3 63 61.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.6e-13 80.1 125 48.0
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.0e-12 76.3 84 46.4
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 5.8e-10 70.1 43 88.4
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.7e-09 68.6 103 42.7
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 8.3e-09 66.2 45 75.6
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 8.3e-09 66.2 45 75.6
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 8.3e-09 66.2 45 75.6
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 7.0e-08 63.2 38 73.7


User provided reference genes

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