Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G12840 Arabidopsis lyrata HOM05D007509 ORTHO05D009525 2.0e-43 178.7 90 100.0
AT5G03460 Arabidopsis thaliana HOM05D007509 ORTHO05D009525 3.5e-40 167.9 90 93.3
Sp6g39270 Schrenkiella parvula HOM05D007509 ORTHO05D009525 4.6e-40 167.5 90 90.0
Carub.0006s0228 Capsella rubella HOM05D007509 ORTHO05D009525 2.1e-37 158.7 90 85.6
CARHR209880 Cardamine hirsuta HOM05D007509 ORTHO05D009525 1.4e-36 156.0 90 84.4
Thhalv10015146m.g Eutrema salsugineum HOM05D007509 ORTHO05D009525 3.7e-34 147.9 91 81.3
Aa31LG1G21690 Aethionema arabicum HOM05D007509 ORTHO05D009525 9.5e-30 133.3 90 75.6
BolC9t60072H Brassica oleracea HOM05D007509 ORTHO05D009525 4.0e-28 127.9 87 75.9
BcaC06g32063 Brassica carinata HOM05D007509 ORTHO05D009525 2.0e-27 125.6 87 77.0
A10p32560 Brassica napus HOM05D007509 ORTHO05D009525 2.0e-27 125.6 87 73.6
BraA10t45291Z Brassica rapa HOM05D007509 ORTHO05D009525 2.0e-27 125.6 87 73.6
C09p73360 Brassica napus HOM05D007509 ORTHO05D009525 4.4e-27 124.4 87 75.9
C02p01090 Brassica napus HOM05D007509 ORTHO05D009525 6.4e-26 120.6 86 72.1
BolC2t06099H Brassica oleracea HOM05D007509 ORTHO05D009525 6.4e-26 120.6 86 72.1
BraA02t04762Z Brassica rapa HOM05D007509 ORTHO05D009525 6.4e-26 120.6 86 72.1
THA.LOC104816357 Tarenaya hassleriana HOM05D007509 ORTHO05D009525 2.8e-21 105.1 90 60.0
FAN05G4600 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.0e-19 99.0 90 54.4
FAN05G4982 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.0e-19 99.0 90 54.4
Duzib093G1616 Durio zibethinus HOM05D007509 ORTHO05D009525 9.9e-19 96.7 90 55.6
FvH4_6g16590 Fragaria vesca HOM05D007509 ORTHO05D009525 1.3e-18 96.3 90 53.3
FAN14G0331 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.3e-18 96.3 90 53.3
Gohir.A04G071200 Gossypium hirsutum HOM05D007509 ORTHO05D009525 4.9e-18 94.4 78 55.1
Gorai.009G414000 Gossypium raimondii HOM05D007509 ORTHO05D009525 4.9e-18 94.4 78 55.1
FAN02G1612 Fragaria x ananassa HOM05D007509 ORTHO05D009525 6.4e-18 94.0 90 52.2
Gohir.D04G109900 Gossypium hirsutum HOM05D007509 ORTHO05D009525 6.4e-18 94.0 78 55.1
RcHm_v2.0_Chr3g0470531 Rosa chinensis HOM05D007509 ORTHO05D009525 6.4e-18 94.0 90 51.1
Atru.chr8.1768 Acer truncatum HOM05D007509 ORTHO05D009525 1.4e-17 92.8 77 55.8
MD12G1108800 Malus domestica HOM05D007509 ORTHO05D009525 4.2e-17 91.3 90 54.4
TWI74G1449 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 5.4e-17 90.9 92 53.3
BcaB05g21842 Brassica carinata HOM05D007509 ORTHO05D009525 9.2e-17 90.1 65 75.4
FAN09G1001 Fragaria x ananassa HOM05D007509 ORTHO05D009525 9.2e-17 90.1 80 53.8
Thecc.05G069500 Theobroma cacao HOM05D007509 ORTHO05D009525 2.1e-16 89.0 91 53.8
TWI53G0287 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 4.6e-16 87.8 79 54.4
Manes.07G043500 Manihot esculenta HOM05D007509 ORTHO05D009525 6.0e-16 87.4 73 56.2
Actinidia32487 Actinidia chinensis HOM05D007509 ORTHO05D009525 1.0e-15 86.7 83 50.6
BcaB07g30588 Brassica carinata HOM05D007509 ORTHO05D009525 1.0e-15 86.7 63 69.8
Gohir.A09G145100 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.0e-15 86.7 90 48.9
PGR004G0585 Punica granatum HOM05D007509 ORTHO05D009525 1.0e-15 86.7 76 53.9
arahy.Tifrunner.gnm1.ann1.KQD9UV Arachis hypogaea HOM05D007509 ORTHO05D009525 1.3e-15 86.3 90 52.2
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 1.3e-15 86.3 82 52.4
GSVIVG01033662001 Vitis vinifera HOM05D007509 ORTHO05D009525 1.3e-15 86.3 83 51.8
Actinidia31324 Actinidia chinensis HOM05D007509 ORTHO05D009525 2.3e-15 85.5 78 56.4
arahy.Tifrunner.gnm1.ann1.M25UX0 Arachis hypogaea HOM05D007509 ORTHO05D009525 2.3e-15 85.5 90 52.2
arahy.Tifrunner.gnm1.ann1.Z0MF7F Arachis hypogaea HOM05D007509 ORTHO05D009525 2.3e-15 85.5 90 52.2
Lj5g0013352 Lotus japonicus HOM05D007509 ORTHO05D009525 2.3e-15 85.5 90 52.2
Aa31LG3G2340 Aethionema arabicum HOM05D007509 ORTHO05D009525 3.0e-15 85.1 71 60.6
Cc06_g04400 Coffea canephora HOM05D007509 ORTHO05D009525 3.0e-15 85.1 83 48.2
Gohir.D09G141225 Gossypium hirsutum HOM05D007509 ORTHO05D009525 3.0e-15 85.1 90 48.9
Gorai.006G162100 Gossypium raimondii HOM05D007509 ORTHO05D009525 3.0e-15 85.1 90 47.8
Medtr7g102320 Medicago truncatula HOM05D007509 ORTHO05D009525 3.9e-15 84.7 92 52.2
Potri.006G122600 Populus trichocarpa HOM05D007509 ORTHO05D009525 3.9e-15 84.7 78 57.7
Dinv35801 Davidia involucrata HOM05D007509 ORTHO05D009525 5.1e-15 84.3 82 51.2
TAR633G0343 Trochodendron aralioides HOM05D007509 ORTHO05D009525 6.6e-15 84.0 75 52.0
Nn6g35255 Nelumbo nucifera HOM05D007509 ORTHO05D009525 8.7e-15 83.6 57 59.6
Psat6g074800 Pisum sativum HOM05D007509 ORTHO05D009525 8.7e-15 83.6 90 48.9
Cpa.g.sc92.105 Carica papaya HOM05D007509 ORTHO05D009525 1.1e-14 83.2 90 47.8
CiPaw.09G170600 Carya illinoinensis HOM05D007509 ORTHO05D009525 1.1e-14 83.2 93 50.5
Lalb_Chr02g0155761 Lupinus albus HOM05D007509 ORTHO05D009525 1.5e-14 82.8 92 48.9
PSO339G5046 Papaver somniferum HOM05D007509 ORTHO05D009525 1.5e-14 82.8 58 63.8
Nn2g13827 Nelumbo nucifera HOM05D007509 ORTHO05D009525 1.9e-14 82.4 73 53.4
Prupe.7G127400 Prunus persica HOM05D007509 ORTHO05D009525 1.9e-14 82.4 65 58.5
QL07p042864 Quercus lobata HOM05D007509 ORTHO05D009525 1.9e-14 82.4 77 53.2
TPR.G31192 Trifolium pratense HOM05D007509 ORTHO05D009525 2.5e-14 82.0 90 51.1
CANSAT80G0537 Cannabis sativa HOM05D007509 ORTHO05D009525 4.3e-14 81.3 78 50.0
Rhsim03G0090000 Rhododendron simsii HOM05D007509 ORTHO05D009525 4.3e-14 81.3 86 50.0
ATR0723G032 Amborella trichopoda HOM05D007509 ORTHO05D009525 5.6e-14 80.9 57 59.6
Ciclev10013275m.g Citrus clementina HOM05D007509 ORTHO05D009525 5.6e-14 80.9 64 53.1
TPR.G32808 Trifolium pratense HOM05D001446 ORTHO05D001360 7.3e-14 80.5 88 47.7
Medtr1g063000 Medicago truncatula HOM05D007509 ORTHO05D009525 9.6e-14 80.1 52 65.4
TAR369G0282 Trochodendron aralioides HOM05D007509 ORTHO05D009525 9.6e-14 80.1 82 47.6
ECA246G0714 Erigeron canadensis HOM05D007509 ORTHO05D009525 1.6e-13 79.3 81 50.6
HanXRQChr14g0432941 Helianthus annuus HOM05D007509 ORTHO05D009525 1.6e-13 79.3 72 54.2
AUR62036098 Chenopodium quinoa HOM05D007509 ORTHO05D009525 2.1e-13 79.0 79 49.4
Glyma.10G054000 Glycine max HOM05D007509 ORTHO05D009525 2.1e-13 79.0 54 63.0
Zm00001eb190910 Zea mays HOM05D007509 ORTHO05D009525 2.1e-13 79.0 77 46.8
vmacro07305 Vaccinium macrocarpon HOM05D007509 ORTHO05D009525 2.8e-13 78.6 81 48.1
Os02g0823600 Oryza sativa ssp. japonica HOM05D007509 ORTHO05D009525 4.7e-13 77.8 89 41.6
Psat3g041640 Pisum sativum HOM05D007509 ORTHO05D009525 4.7e-13 77.8 57 57.9
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 6.2e-13 77.4 57 57.9
Migut.L01714 Erythranthe guttata HOM05D007509 ORTHO05D009525 1.1e-12 76.6 82 47.6
Peaxi162Scf00722g00034 Petunia axillaris HOM05D007509 ORTHO05D009525 1.4e-12 76.3 54 64.8
AUR62019539 Chenopodium quinoa HOM05D007509 ORTHO05D009525 1.8e-12 75.9 56 58.9
PGSC0003DMG400003867 Solanum tuberosum HOM05D007509 ORTHO05D009525 1.8e-12 75.9 90 45.6
Aqoxy2G01711 Aquilegia oxysepala HOM05D007509 ORTHO05D009525 2.4e-12 75.5 78 44.9
CDE08G0025 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 3.1e-12 75.1 69 52.2
Glyma.13G141100 Glycine max HOM05D007509 ORTHO05D009525 3.1e-12 75.1 90 44.4
Nitab4.5_0004476g0020 Nicotiana tabacum HOM05D007509 ORTHO05D009525 3.1e-12 75.1 90 47.8
Sopen09g003160 Solanum pennellii HOM05D007509 ORTHO05D009525 6.9e-12 73.9 90 45.6
EL10Ac4g08317 Beta vulgaris HOM05D007509 ORTHO05D009525 1.2e-11 73.2 69 50.7
Phvul.007G148600 Phaseolus vulgaris HOM05D007509 ORTHO05D009525 1.5e-11 72.8 94 42.6
Solyc09g008335.1 Solanum lycopersicum HOM05D007509 ORTHO05D009525 2.6e-11 72.0 90 45.6
Sed0001231 Sechium edule HOM05D007509 ORTHO05D009525 4.4e-11 71.2 69 44.9
CDE02G4326 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 9.9e-11 70.1 83 42.2
MELO3C009368.2 Cucumis melo HOM05D007509 ORTHO05D009525 2.9e-10 68.6 90 42.2
CsaV3_3G036080 Cucumis sativus L. HOM05D007509 ORTHO05D009525 2.9e-10 68.6 90 42.2
SMO147G0160 Selaginella moellendorffii HOM05D007509 ORTHO05D009525 2.1e-08 62.4 48 54.2
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 2.3e-07 58.9 45 60.0
unitig_0.g681 Utricularia gibba HOM05D007509 ORTHO05D009525 3.9e-07 58.2 44 56.8
Sed0008520 Sechium edule HOM05D007509 ORTHO05D009525 7.3e-06 53.9 39 48.7


User provided reference genes

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