Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 8.1e-288 993.0 498 100.0
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.2e-283 979.2 498 98.8
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.9e-281 971.8 499 98.0
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 6.2e-272 940.3 500 94.6
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.1e-271 939.5 508 93.5
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 3.8e-269 931.0 501 93.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 3.8e-269 931.0 501 93.6
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 6.4e-269 930.2 500 94.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 8.4e-269 929.9 500 94.0
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-268 929.1 500 93.6
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-268 929.1 501 93.6
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 7.8e-267 923.3 499 93.4
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 3.0e-266 921.4 499 93.2
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.5e-265 918.3 499 93.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.5e-265 918.3 498 93.0
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 5.6e-265 917.1 504 92.1
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-264 916.0 500 92.6
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-264 916.0 499 92.6
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 4.0e-263 911.0 502 92.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 7.6e-262 906.7 502 91.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.6e-256 889.0 497 89.3
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 5.8e-254 880.6 483 92.1
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.4e-247 858.6 507 84.4
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-243 845.9 495 87.1
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 9.0e-239 830.1 504 82.7
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-232 809.7 445 92.1
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 6.1e-227 790.8 503 76.9
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 9.1e-223 776.9 500 76.6
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.0e-222 775.8 509 75.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.3e-221 773.1 509 74.9
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 6.5e-221 770.8 509 75.2
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.5e-220 768.8 509 77.0
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.6e-219 765.0 509 74.9
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.4e-218 763.1 505 75.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.8e-218 762.7 506 74.9
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 3.0e-218 761.9 508 75.4
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 5.2e-218 761.1 507 75.1
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 5.2e-218 761.1 515 73.8
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.7e-216 756.1 508 75.6
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 8.2e-216 753.8 510 73.5
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 7.0e-215 750.7 505 73.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 2.6e-214 748.8 510 73.7
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.5e-214 748.0 511 73.2
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 7.7e-214 747.3 517 72.3
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 8.5e-213 743.8 508 73.8
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.5e-212 743.0 508 73.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 5.5e-212 741.1 508 72.4
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 6.1e-211 737.6 508 72.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.0e-210 736.9 509 73.7
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 5.2e-210 734.6 514 71.6
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 6.8e-210 734.2 506 73.3
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.2e-209 733.4 507 72.8
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.5e-209 733.0 507 72.0
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 3.4e-209 731.9 509 72.7
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 4.4e-209 731.5 509 71.7
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.1e-207 724.9 505 71.5
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.1e-207 724.9 509 70.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 4.1e-207 724.9 510 71.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 5.4e-207 724.5 513 70.4
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.7e-206 722.2 504 70.8
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.5e-206 721.5 478 75.3
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-205 720.3 514 70.0
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.7e-205 719.5 505 71.1
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.2e-205 719.2 497 71.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.8e-205 718.4 512 70.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 6.5e-205 717.6 508 71.7
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.5e-205 717.2 506 70.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.5e-204 714.5 511 70.1
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.7e-203 712.2 512 69.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 4.7e-203 711.4 505 70.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.8e-202 709.5 517 70.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.3e-202 709.1 548 66.2
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.2e-202 708.0 508 71.7
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.2e-202 708.0 492 71.5
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.8e-202 707.6 517 69.6
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.5e-201 706.4 513 68.8
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.5e-201 706.4 507 69.6
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.5e-201 706.4 516 67.8
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.7e-201 704.5 508 71.5
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 7.5e-201 704.1 547 66.4
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-200 702.2 547 66.4
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 4.9e-200 701.4 510 69.2
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.1e-199 700.3 506 68.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.1e-199 698.7 502 69.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 5.4e-199 698.0 474 73.6
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 7.0e-199 697.6 474 74.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.0e-198 696.0 498 70.7
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.5e-198 695.3 498 70.5
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 6.6e-197 691.0 475 72.6
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.5e-196 689.1 512 67.6
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.2e-195 686.8 513 67.6
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.3e-194 682.6 509 67.8
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 5.2e-194 681.4 513 67.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.0e-193 679.5 504 68.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.3e-192 676.8 601 60.6
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.1e-191 673.7 510 66.9
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.4e-191 672.5 526 63.7
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 3.2e-191 672.2 505 67.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.1e-191 671.8 508 69.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.2e-191 670.6 508 69.3
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 7.8e-190 667.5 455 74.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 7.8e-190 667.5 513 66.7
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 5.0e-189 664.8 502 66.9
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 8.6e-189 664.1 513 64.9
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.3e-188 661.8 534 66.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.8e-186 656.4 582 59.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.1e-186 655.6 495 65.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 4.0e-186 655.2 459 71.7
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 8.9e-186 654.1 490 67.1
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.5e-185 653.3 499 64.1
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.7e-184 648.7 510 66.5
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 6.4e-184 647.9 567 60.8
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.0e-182 642.9 509 66.0
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.7e-182 642.5 445 72.8
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.5e-182 642.1 526 64.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.0e-181 640.6 505 65.9
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 4.3e-180 635.2 506 63.0
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 7.3e-180 634.4 530 63.0
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.1e-178 630.6 510 62.4
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.5e-177 626.7 508 62.8
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.2e-176 622.9 514 63.4
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.1e-170 602.4 472 65.0
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.4e-159 567.0 404 69.8
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.9e-157 558.9 399 70.2
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 3.6e-155 552.4 541 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.7e-150 536.2 534 53.2
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 6.2e-147 525.0 663 47.2
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 7.6e-145 518.1 492 58.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.4e-144 515.0 416 62.0
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 6.0e-134 481.9 455 58.7
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.0e-133 481.1 490 54.7
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.2e-123 446.8 337 68.2
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.9e-117 426.0 270 78.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-113 414.5 273 74.7
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.2e-103 379.8 279 69.2
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 5.5e-87 325.9 243 68.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 8.3e-83 312.0 241 63.1
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.8e-82 310.8 211 71.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.3e-79 298.9 246 61.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.0e-73 280.8 495 39.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 6.2e-70 269.2 217 63.6
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.7e-65 253.8 571 31.5
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.5e-55 220.7 388 35.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.4e-42 177.6 135 63.7
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.0e-41 172.9 173 53.8
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 6.6e-40 169.5 106 78.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.8e-35 153.7 184 42.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.6e-30 137.1 249 39.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.6e-30 137.1 121 61.2
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-29 135.6 249 38.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 9.9e-28 129.0 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.4e-26 125.2 114 52.6
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.5e-23 115.2 63 87.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.5e-18 96.7 183 28.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.8e-13 81.6 114 44.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 7.6e-12 76.3 48 70.8
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-11 75.1 61 63.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.6e-09 67.4 209 27.3
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 3.0e-08 64.3 127 29.9
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.7e-08 62.8 105 41.9
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-07 62.4 36 80.6
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.5e-07 62.0 80 45.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.5e-07 62.0 75 38.7
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0


User provided reference genes

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