Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.6e-147 526.2 284 100.0
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.8e-127 459.5 286 88.5
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 6.5e-117 424.5 287 84.3
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.5e-105 386.7 297 76.4
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 4.4e-105 385.2 272 80.5
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.0e-101 374.0 302 73.8
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.4e-90 337.0 299 65.9
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 7.3e-84 314.7 292 68.8
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.9e-80 302.8 292 63.4
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.9e-80 302.8 292 63.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 4.1e-79 298.9 292 62.7
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.5e-62 242.7 331 51.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-59 233.8 331 52.0
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-40 170.6 315 41.3
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 3.0e-37 159.8 319 39.2
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 6.7e-37 158.7 246 47.2
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 6.7e-37 158.7 320 40.9
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.9e-36 157.1 319 41.1
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.5e-36 156.8 305 41.3
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.4e-36 155.2 319 40.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.1e-35 153.7 308 41.6
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.1e-34 151.4 291 44.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.4e-34 150.2 309 39.8
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.5e-33 147.5 291 43.6
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.5e-33 147.5 331 38.1
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.0e-33 147.1 317 40.4
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 5.9e-33 145.6 308 39.9
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.6e-33 145.2 291 43.0
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.3e-32 144.4 326 38.0
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.7e-32 144.1 333 38.4
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.7e-32 144.1 309 40.8
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 2.9e-32 143.3 289 40.1
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.9e-32 143.3 308 36.4
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 5.0e-32 142.5 271 39.5
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 5.0e-32 142.5 279 40.9
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 5.0e-32 142.5 298 39.3
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 6.5e-32 142.1 236 43.2
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 8.5e-32 141.7 317 39.7
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.4e-31 141.0 261 41.0
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 9.3e-31 138.3 294 42.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.6e-30 137.5 312 37.8
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 3.6e-30 136.3 345 36.8
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 3.6e-30 136.3 267 38.6
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.6e-30 136.0 327 37.3
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 6.1e-30 135.6 304 44.1
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.3e-29 133.7 234 42.3
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.3e-29 133.7 278 35.6
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.3e-29 133.7 252 43.7
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 5.1e-29 132.5 225 42.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 5.1e-29 132.5 225 42.7
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 5.1e-29 132.5 317 38.8
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.1e-28 131.3 292 37.0
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-28 130.6 225 41.8
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-28 130.6 225 41.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.5e-28 130.2 304 39.1
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-28 129.8 225 41.8
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-28 129.8 225 41.8
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.3e-28 129.8 306 37.3
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 4.3e-28 129.4 252 41.7
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 4.3e-28 129.4 315 37.1
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 5.7e-28 129.0 293 37.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-28 128.6 225 41.8
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-27 127.9 325 36.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.6e-27 127.5 303 37.3
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.8e-27 126.7 303 37.3
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.8e-27 126.7 281 37.4
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.8e-27 126.7 281 37.4
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 3.7e-27 126.3 280 35.7
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 6.3e-27 125.6 294 41.5
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.3e-27 125.6 304 36.8
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 6.3e-27 125.6 296 36.8
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 8.2e-27 125.2 280 42.5
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 8.2e-27 125.2 296 42.9
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.2e-27 125.2 279 36.2
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.4e-26 124.4 311 41.2
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.8e-26 124.0 294 41.2
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.1e-26 123.2 211 43.1
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 4.1e-26 122.9 291 40.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 6.9e-26 122.1 212 41.0
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 9.0e-26 121.7 286 39.2
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.2e-25 121.3 236 38.6
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 3.4e-25 119.8 341 32.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.3e-24 117.9 320 35.3
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.3e-24 117.9 293 35.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.2e-24 117.1 285 36.8
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 2.9e-24 116.7 296 40.5
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.8e-24 116.3 327 36.1
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 5.0e-24 115.9 303 35.6
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 8.5e-24 115.2 296 40.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 8.5e-24 115.2 293 37.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 8.5e-24 115.2 287 36.6
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.1e-23 114.8 279 34.4
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 5.5e-23 112.5 295 41.7
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 7.2e-23 112.1 300 35.7
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 9.4e-23 111.7 341 33.1
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.2e-22 111.3 292 36.0
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.6e-22 110.9 294 34.0
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.6e-22 110.9 171 47.4
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.1e-22 110.5 234 43.2
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.1e-22 110.5 286 34.3
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.7e-22 110.2 285 34.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 2.7e-22 110.2 277 38.3
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.1e-22 109.0 322 34.8
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 6.1e-22 109.0 300 33.3
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 7.9e-22 108.6 301 33.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.0e-21 106.7 198 39.9
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 3.0e-21 106.7 298 34.9
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 3.9e-21 106.3 201 41.3
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 5.1e-21 105.9 286 36.4
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 8.8e-21 105.1 304 35.2
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.5e-20 104.4 264 39.4
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 2.0e-20 104.0 301 34.6
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-20 103.6 200 39.5
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 5.7e-20 102.4 293 34.5
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.3e-19 101.3 176 43.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 8.2e-19 98.6 303 33.3
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 4.1e-18 96.3 298 34.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.3e-18 95.9 290 32.1
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.2e-17 94.7 268 36.9
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-17 94.7 235 35.7
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 2.0e-17 94.0 354 31.1
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 2.6e-17 93.6 288 35.1
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 7.7e-17 92.0 281 33.1
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.0e-16 91.7 199 39.7
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.3e-16 91.3 202 38.1
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.3e-16 91.3 224 35.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.2e-16 90.5 302 30.5
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 5.0e-16 89.4 206 36.9
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-15 87.8 280 35.4
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.4e-15 87.8 314 31.5
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.5e-15 87.0 82 62.2
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 3.2e-15 86.7 339 31.9
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 7.2e-15 85.5 284 31.7
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 3.9e-13 79.7 191 40.8
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 5.2e-13 79.3 277 33.6
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 5.2e-13 79.3 253 36.8
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.1e-12 78.2 293 31.4
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-12 77.8 398 30.9
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 2.0e-12 77.4 301 32.9
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.3e-12 76.6 75 54.7
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 9.7e-12 75.1 82 53.7
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.7e-11 74.3 285 29.1
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.8e-11 73.6 278 33.1
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.4e-10 71.2 234 32.9
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 7.0e-10 68.9 281 31.7
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 7.0e-10 68.9 275 30.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.3e-08 64.7 267 29.6
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.0e-08 62.8 212 34.4
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 5.0e-08 62.8 229 31.9
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 8.5e-08 62.0 158 37.3
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.2e-07 58.9 143 33.6


User provided reference genes

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