Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 5.1e-120 434.5 229 100.0
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 4.5e-116 421.4 229 93.0
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 1.5e-108 396.4 229 87.8
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 1.5e-95 353.2 237 77.2
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 2.8e-94 349.0 238 78.6
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 4.8e-94 348.2 238 75.2
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 6.3e-94 347.8 237 78.5
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 8.2e-94 347.4 237 75.9
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 4.5e-92 341.7 238 73.5
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 8.5e-91 337.4 236 74.6
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 2.0e-79 299.7 243 63.4
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 1.0e-64 250.8 229 55.9
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.4e-64 250.4 161 78.3
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 2.9e-51 206.1 232 49.1
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 6.8e-48 194.9 201 48.3
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 2.8e-46 189.5 230 44.3
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 1.1e-45 187.6 237 47.3
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 3.2e-45 186.0 232 48.7
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 3.2e-45 186.0 200 46.0
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 4.1e-45 185.7 229 45.0
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 4.1e-45 185.7 229 45.0
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 3.5e-44 182.6 230 44.3
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 3.5e-44 182.6 215 46.0
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 4.5e-44 182.2 231 44.2
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 2.9e-43 179.5 239 41.8
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 5.0e-43 178.7 229 40.6
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 6.6e-43 178.3 167 51.5
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 1.9e-42 176.8 232 42.2
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 1.9e-42 176.8 199 46.2
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 4.3e-42 175.6 234 41.9
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 4.3e-42 175.6 174 49.4
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 2.8e-41 172.9 236 41.9
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 4.7e-41 172.2 236 42.8
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 1.0e-40 171.0 234 41.5
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 3.1e-40 169.5 233 41.2
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 4.0e-40 169.1 163 48.5
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 8.9e-40 167.9 238 39.9
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 1.2e-39 167.5 204 44.6
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 2.0e-39 166.8 204 44.1
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 2.6e-39 166.4 239 38.5
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 3.4e-39 166.0 230 40.4
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 3.4e-39 166.0 225 39.1
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 4.4e-39 165.6 167 48.5
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 4.4e-39 165.6 191 45.0
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 9.8e-39 164.5 232 40.9
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 1.3e-38 164.1 232 40.9
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 1.7e-38 163.7 229 39.7
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 3.7e-38 162.5 206 42.2
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 3.7e-38 162.5 207 43.5
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 4.9e-38 162.2 167 45.5
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 6.4e-38 161.8 175 45.7
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 6.4e-38 161.8 232 40.1
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 8.3e-38 161.4 167 50.9
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 1.1e-37 161.0 168 45.2
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 1.1e-37 161.0 231 40.7
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 1.4e-37 160.6 174 46.0
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 2.4e-37 159.8 232 37.1
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 3.2e-37 159.5 225 39.1
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 4.1e-37 159.1 177 46.3
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.6e-36 157.1 197 41.1
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 3.5e-36 156.0 232 41.4
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 6.0e-36 155.2 249 37.3
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 6.0e-36 155.2 177 42.9
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 7.8e-36 154.8 199 39.7
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 1.0e-35 154.5 230 40.0
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 2.3e-35 153.3 219 40.6
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 3.9e-35 152.5 249 36.9
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.1e-34 151.0 184 44.0
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.3e-34 149.4 205 40.5
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 4.3e-34 149.1 203 40.4
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.2e-33 147.5 250 36.8
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.2e-33 147.5 241 36.1
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.1e-33 146.7 249 36.1
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 6.2e-33 145.2 177 40.1
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 1.1e-32 144.4 169 40.8
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.4e-32 144.1 175 40.6
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 5.2e-32 142.1 177 39.0
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 5.2e-32 142.1 177 39.5
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 1.5e-31 140.6 233 38.6
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 3.4e-31 139.4 175 40.6
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 9.8e-31 137.9 259 37.1
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 2.9e-30 136.3 175 40.6
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 6.4e-30 135.2 208 36.5
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 1.9e-29 133.7 175 40.0
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 7.8e-28 128.3 111 50.5
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 1.7e-27 127.1 178 38.2
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 3.9e-27 125.9 264 32.2
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 5.1e-27 125.6 172 38.4
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 8.6e-27 124.8 194 37.1
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.5e-26 124.0 229 31.9
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 1.2e-25 120.9 172 39.5
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 4.7e-25 119.0 231 35.9
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 3.5e-20 102.8 88 50.0
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.0e-19 101.3 95 46.3
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 1.1e-18 97.8 121 38.0
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 1.5e-18 97.4 78 53.8
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 8.1e-17 91.7 88 53.4
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 4.4e-15 85.9 93 40.9
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 4.6e-12 75.9 65 52.3
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 6.6e-11 72.0 113 35.4
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.9e-10 70.5 78 44.9
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 9.6e-10 68.2 71 50.7
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.2e-07 61.2 61 52.5


User provided reference genes

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