Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 5.6e-98 360.9 178 100.0
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 4.7e-89 331.3 178 91.0
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 1.8e-88 329.3 178 91.6
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 4.9e-86 321.2 177 87.6
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 1.2e-84 316.6 179 87.7
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 1.6e-84 316.2 178 86.5
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 2.0e-84 315.8 178 88.8
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 6.0e-84 314.3 178 86.0
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 5.0e-83 311.2 178 85.4
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 5.6e-82 307.8 179 85.5
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 4.7e-81 304.7 179 84.4
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 5.8e-79 297.7 179 82.7
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 8.4e-70 267.3 144 87.5
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 2.8e-65 252.3 185 69.2
BolC1t02552H Brassica oleracea HOM05D007555 ORTHO05D009521 7.6e-63 244.2 167 75.4
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 1.4e-61 240.0 156 77.6
C01p26070 Brassica napus HOM05D007555 ORTHO05D009521 1.2e-60 236.9 167 74.3
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 7.8e-60 234.2 156 76.3
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 8.4e-54 214.2 171 63.2
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 1.4e-53 213.4 181 64.1
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 1.6e-52 209.9 163 63.8
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 2.1e-52 209.5 162 61.7
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 1.3e-51 206.8 144 66.0
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 1.8e-51 206.5 160 63.1
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 1.8e-51 206.5 162 61.7
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 2.3e-51 206.1 149 66.4
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 3.0e-51 205.7 149 66.4
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 3.0e-51 205.7 164 61.0
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 3.9e-51 205.3 149 66.4
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 5.1e-51 204.9 181 58.6
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 6.7e-51 204.5 173 55.5
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 8.7e-51 204.1 151 62.3
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 1.9e-50 203.0 171 56.1
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 2.5e-50 202.6 162 60.5
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 4.3e-50 201.8 132 67.4
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 5.6e-50 201.4 161 60.2
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 7.4e-50 201.1 184 57.1
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 9.6e-50 200.7 173 57.2
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 1.6e-49 199.9 151 60.9
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 1.6e-49 199.9 172 57.6
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 2.1e-49 199.5 182 57.7
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 2.8e-49 199.1 176 54.0
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 2.8e-49 199.1 141 64.5
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 3.7e-49 198.7 175 58.3
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 4.8e-49 198.4 140 66.4
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 4.8e-49 198.4 177 49.7
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 4.8e-49 198.4 173 51.4
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 8.1e-49 197.6 168 58.3
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 8.1e-49 197.6 185 53.0
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.1e-48 197.2 180 55.0
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 1.4e-48 196.8 131 64.9
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 1.4e-48 196.8 130 67.7
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 1.8e-48 196.4 172 57.6
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 4.0e-48 195.3 159 56.0
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 5.3e-48 194.9 118 71.2
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 6.9e-48 194.5 148 59.5
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 9.0e-48 194.1 163 58.3
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 1.2e-47 193.7 142 61.3
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 1.2e-47 193.7 178 56.2
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 2.6e-47 192.6 184 53.3
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 2.6e-47 192.6 172 55.2
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 5.8e-47 191.4 167 56.3
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 7.6e-47 191.0 168 57.1
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 7.6e-47 191.0 159 57.9
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 1.3e-46 190.3 169 54.4
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 1.3e-46 190.3 162 56.8
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 1.3e-46 190.3 148 59.5
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 1.7e-46 189.9 169 54.4
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 2.2e-46 189.5 158 55.1
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 4.9e-46 188.3 149 57.0
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 1.4e-45 186.8 142 61.3
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 1.4e-45 186.8 152 55.9
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 1.4e-45 186.8 152 55.9
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 1.4e-45 186.8 152 55.9
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 1.4e-45 186.8 120 66.7
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 1.9e-45 186.4 147 56.5
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 2.4e-45 186.0 168 53.6
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 2.4e-45 186.0 126 61.9
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 5.5e-45 184.9 166 54.8
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 2.1e-44 183.0 167 53.3
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 3.5e-44 182.2 160 56.2
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 1.3e-41 173.7 163 50.9
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 1.1e-40 170.6 115 62.6
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 1.5e-39 166.8 133 56.4
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 1.1e-37 160.6 171 49.7
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 4.2e-37 158.7 150 51.3
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 9.3e-37 157.5 138 57.2
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 1.2e-36 157.1 124 54.8
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 4.6e-36 155.2 123 58.5
Medtr0016s0020 Medicago truncatula HOM05D007555 ORTHO05D009521 1.8e-35 153.3 142 52.1
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 2.3e-35 152.9 191 46.1
Lalb_Chr02g0153411 Lupinus albus HOM05D007555 ORTHO05D009521 5.7e-34 148.3 87 75.9
Pp3c1_22520 Physcomitrium patens HOM05D007555 ORTHO05D009521 1.1e-32 144.1 148 46.6
Peaxi162Scf00597g00516 Petunia axillaris HOM05D007555 ORTHO05D009521 1.7e-30 136.7 182 41.8
FAN02G2228 Fragaria x ananassa HOM05D007555 ORTHO05D009521 1.5e-26 123.6 88 59.1
TAR636G0687 Trochodendron aralioides HOM05D007555 ORTHO05D009521 3.6e-20 102.4 93 51.6
SEGI_05937 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 1.8e-16 90.1 56 69.6
Lj2A103T67 Lonicera japonica HOM05D007555 ORTHO05D009521 8.0e-12 74.7 168 32.1
COL.COLO4_10316 Corchorus olitorius HOM05D007555 ORTHO05D009521 1.5e-10 70.5 89 44.9
Lalb_Chr02g0153401 Lupinus albus HOM05D007555 ORTHO05D009521 5.3e-08 62.0 59 52.5
BolC2t10195H Brassica oleracea HOM05D007555 ORTHO05D009521 1.2e-07 60.8 51 76.5
CSS0046800 Camellia sinensis var. sinensis HOM05D007555 ORTHO05D009521 2.6e-07 59.7 88 40.9


User provided reference genes

Program Settings