Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.3e-258 895.2 504 100.0
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 4.3e-180 635.2 607 63.4
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 5.4e-130 468.8 613 50.7
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 1.0e-128 464.5 712 45.6
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 3.8e-128 462.6 596 52.9
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 1.2e-113 414.5 529 53.9
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 1.2e-92 344.7 597 44.6
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 9.2e-90 335.1 532 45.3
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 1.3e-80 304.7 516 43.2
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 6.9e-77 292.4 525 41.5
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.9e-74 284.3 498 42.2
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.1e-61 241.9 511 38.4
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 4.2e-58 229.9 506 34.8
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 7.2e-34 149.4 554 27.4
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 3.6e-33 147.1 496 27.4
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 2.8e-30 137.5 538 27.3
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.8e-29 134.8 241 34.4
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.4e-29 134.4 220 36.4
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 3.1e-29 134.0 485 27.4
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 7.0e-29 132.9 134 46.3
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 1.2e-28 132.1 490 26.7
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.0e-28 131.3 134 48.5
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 2.0e-28 131.3 490 26.1
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 2.0e-28 131.3 545 27.5
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.0e-27 129.0 542 25.6
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.7e-27 128.3 205 34.6
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 6.5e-27 126.3 566 25.8
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 6.5e-27 126.3 518 26.8
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 8.5e-27 125.9 121 47.9
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 3.2e-26 124.0 511 25.6
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 4.2e-26 123.6 565 25.3
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 5.5e-26 123.2 137 42.3
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 2.1e-25 121.3 504 25.2
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 6.1e-25 119.8 120 47.5
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 1.4e-24 118.6 114 46.5
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.8e-24 118.2 193 37.3
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 3.0e-24 117.5 109 46.8
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 5.2e-24 116.7 123 46.3
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 6.7e-24 116.3 141 39.0
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 6.7e-24 116.3 494 25.9
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 8.8e-24 115.9 141 38.3
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.2e-23 115.5 141 39.0
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 1.2e-23 115.5 105 50.5
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.0e-23 114.8 501 25.7
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.0e-23 114.8 147 38.1
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.4e-23 113.6 141 37.6
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.3e-22 112.1 115 44.3
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.3e-22 112.1 131 42.0
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 3.7e-22 110.5 491 24.0
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 6.3e-22 109.8 228 32.9
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 1.8e-21 108.2 128 39.8
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 2.4e-21 107.8 501 25.7
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 3.1e-21 107.5 210 33.3
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 3.1e-21 107.5 203 34.5
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 9.1e-21 105.9 257 31.5
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.2e-20 105.5 484 26.0
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 2.0e-20 104.8 128 39.1
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 2.7e-20 104.4 94 50.0
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 3.5e-20 104.0 610 24.4
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 4.5e-20 103.6 257 31.1
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 5.9e-20 103.2 109 45.9
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 7.7e-20 102.8 112 42.0
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 1.3e-19 102.1 509 27.9
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.3e-19 102.1 164 36.0
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 1.7e-19 101.7 158 36.1
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.7e-19 101.7 491 26.1
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.7e-19 101.7 118 40.7
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.2e-19 101.3 118 41.5
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 5.0e-19 100.1 134 40.3
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 8.5e-19 99.4 110 43.6
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 8.5e-19 99.4 489 25.8
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 1.5e-18 98.6 107 43.9
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.9e-18 98.2 124 41.9
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 3.2e-18 97.4 495 25.3
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 9.4e-18 95.9 93 48.4
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.2e-17 95.5 146 39.0
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 2.7e-17 94.4 85 49.4
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 2.7e-17 94.4 184 34.8
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 3.6e-17 94.0 104 42.3
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.7e-17 93.6 118 37.3
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.7e-17 93.6 118 37.3
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 6.1e-17 93.2 586 23.9
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 8.0e-17 92.8 680 25.1
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.0e-16 92.4 525 24.6
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.0e-16 92.4 208 34.1
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.4e-16 92.0 510 24.1
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.3e-16 91.3 134 38.1
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 3.0e-16 90.9 118 40.7
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 3.0e-16 90.9 146 34.9
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 3.0e-16 90.9 146 34.9
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 6.8e-16 89.7 105 40.0
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 1.2e-15 89.0 111 38.7
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.2e-15 89.0 111 38.7
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 2.0e-15 88.2 106 41.5
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.6e-15 87.8 133 37.6
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.6e-15 87.8 98 44.9
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 3.4e-15 87.4 157 34.4
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 4.4e-15 87.0 98 44.9
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 5.7e-15 86.7 125 40.8
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.7e-15 86.7 132 37.1
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 9.8e-15 85.9 89 44.9
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 1.3e-14 85.5 125 39.2
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.3e-14 85.5 111 37.8
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 1.3e-14 85.5 461 24.5
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 1.7e-14 85.1 78 47.4
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 3.7e-14 84.0 496 23.8
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 3.7e-14 84.0 151 33.8
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.8e-14 83.6 117 38.5
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.8e-14 83.6 147 36.7
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.8e-14 83.6 147 36.7
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 8.3e-14 82.8 116 36.2
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 8.3e-14 82.8 132 36.4
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 1.4e-13 82.0 121 36.4
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.8e-13 81.6 99 42.4
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 5.4e-13 80.1 102 43.1
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 7.0e-13 79.7 112 34.8
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 9.1e-13 79.3 106 37.7
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 1.6e-12 78.6 99 39.4
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.6e-12 78.6 175 31.4
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 2.0e-12 78.2 104 37.5
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 2.0e-12 78.2 128 36.7
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 2.7e-12 77.8 102 40.2
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 3.5e-12 77.4 102 40.2
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 3.5e-12 77.4 99 38.4
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.0e-11 75.9 102 39.2
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.3e-11 75.5 97 38.1
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 2.9e-11 74.3 119 35.3
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 2.9e-11 74.3 144 32.6
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 3.8e-11 73.9 94 41.5
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 3.8e-11 73.9 139 32.4
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 6.6e-11 73.2 94 40.4
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 6.6e-11 73.2 97 37.1
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 6.6e-11 73.2 97 37.1
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 6.6e-11 73.2 97 37.1
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 6.6e-11 73.2 113 35.4
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 1.1e-10 72.4 102 38.2
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.1e-10 72.4 549 22.6
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 1.1e-10 72.4 141 31.2
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.5e-10 72.0 96 39.6
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 1.5e-10 72.0 94 42.6
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 1.5e-10 72.0 110 40.9
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 2.5e-10 71.2 112 39.3
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 2.5e-10 71.2 140 32.9
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 3.3e-10 70.9 213 25.8
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 4.2e-10 70.5 105 32.4
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 4.2e-10 70.5 93 41.9
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 5.5e-10 70.1 108 35.2
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 9.5e-10 69.3 96 36.5
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 9.5e-10 69.3 118 32.2
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 1.6e-09 68.6 111 35.1
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 2.1e-09 68.2 83 38.6
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.1e-09 68.2 87 43.7
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.1e-09 68.2 80 45.0
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.8e-09 67.8 94 40.4
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 3.6e-09 67.4 97 33.0
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 4.7e-09 67.0 213 26.8
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 4.7e-09 67.0 96 34.4
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 4.7e-09 67.0 81 39.5
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 6.1e-09 66.6 170 28.2
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 8.0e-09 66.2 104 34.6
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 8.0e-09 66.2 104 34.6
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 8.0e-09 66.2 93 38.7
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 1.4e-08 65.5 128 29.7
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.8e-08 65.1 133 32.3
TWI53G0119 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.8e-08 65.1 101 39.6
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.8e-08 65.1 168 28.0
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 4.0e-08 63.9 88 33.0
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 4.0e-08 63.9 117 31.6
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 4.0e-08 63.9 123 34.1
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 6.8e-08 63.2 93 36.6
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 8.9e-08 62.8 211 28.9
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.2e-07 62.4 115 33.0
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.2e-07 62.4 202 27.7
Zm00001eb310180 Zea mays HOM05D003174 ORTHO05D003439 1.5e-07 62.0 122 34.4
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.0e-07 61.6 84 38.1
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 5.7e-07 60.1 110 32.7
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 5.7e-07 60.1 195 27.7
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 9.8e-07 59.3 94 31.9
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.3e-06 58.9 158 27.8
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.7e-06 58.5 90 35.6
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.7e-06 57.4 153 24.8


User provided reference genes

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