Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 9.0e-90 333.6 169 100.0
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 3.6e-78 295.0 171 90.1
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 8.2e-75 283.9 169 87.0
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 1.4e-71 273.1 171 85.4
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 6.7e-69 264.2 170 84.7
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 9.7e-68 260.4 167 85.0
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 8.2e-67 257.3 170 78.2
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.0e-29 134.0 159 56.0
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.3e-29 132.9 165 54.5
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.2e-29 131.7 170 52.9
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 6.8e-29 131.3 157 52.9
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 2.0e-28 129.8 161 52.2
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.6e-28 129.4 159 52.2
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 4.4e-28 128.6 165 49.1
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 7.5e-28 127.9 158 52.5
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 9.8e-28 127.5 163 50.9
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 1.3e-27 127.1 156 52.6
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.3e-27 127.1 163 50.3
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.3e-27 127.1 162 52.5
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 1.7e-27 126.7 168 52.4
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.9e-27 125.9 162 53.1
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.7e-27 125.6 171 46.8
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.7e-27 125.6 171 46.8
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.7e-27 125.6 166 47.6
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 4.9e-27 125.2 159 50.9
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 4.9e-27 125.2 158 53.2
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.4e-27 124.8 166 45.8
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.1e-26 124.0 159 51.6
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.1e-26 124.0 166 48.2
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.1e-26 124.0 166 45.2
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.1e-26 124.0 167 47.3
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.4e-26 123.6 160 48.8
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.9e-26 123.2 165 46.7
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.9e-26 123.2 166 46.4
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 1.9e-26 123.2 159 47.2
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.9e-26 123.2 159 48.4
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 2.4e-26 122.9 166 48.2
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 3.2e-26 122.5 164 47.6
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.4e-26 121.7 166 45.8
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.4e-26 121.7 166 45.8
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 5.4e-26 121.7 170 48.2
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 7.0e-26 121.3 163 47.2
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 9.2e-26 120.9 166 46.4
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.6e-25 120.2 157 49.0
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 1.6e-25 120.2 166 47.0
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.0e-25 119.8 166 46.4
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.0e-25 119.8 167 46.7
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 2.7e-25 119.4 165 48.5
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 2.7e-25 119.4 170 45.9
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 3.5e-25 119.0 166 49.4
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.5e-25 119.0 166 45.2
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 3.5e-25 119.0 168 45.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 4.6e-25 118.6 157 48.4
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 6.0e-25 118.2 157 49.7
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 7.8e-25 117.9 165 49.1
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 7.8e-25 117.9 162 50.6
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.0e-24 117.5 166 45.2
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.0e-24 117.5 163 49.7
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.0e-24 117.5 157 49.0
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 1.3e-24 117.1 158 51.3
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.3e-24 117.1 168 49.4
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.3e-24 117.1 165 44.2
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.3e-24 116.3 173 46.2
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 2.3e-24 116.3 161 49.7
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 2.3e-24 116.3 168 45.2
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 3.0e-24 115.9 159 49.1
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 3.0e-24 115.9 161 46.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 3.0e-24 115.9 159 47.2
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 3.0e-24 115.9 166 45.2
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.9e-24 115.5 166 48.8
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 3.9e-24 115.5 159 48.4
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 3.9e-24 115.5 166 48.2
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.0e-24 115.2 173 46.2
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 5.0e-24 115.2 159 45.3
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 5.0e-24 115.2 166 45.8
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 6.6e-24 114.8 170 46.5
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.1e-23 114.0 165 48.5
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.1e-23 114.0 166 47.6
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.9e-23 113.2 163 47.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.9e-23 113.2 164 48.2
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.5e-23 112.8 170 47.1
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.5e-23 112.8 170 47.1
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.3e-23 112.5 166 46.4
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 3.3e-23 112.5 168 44.6
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 3.3e-23 112.5 167 46.7
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 4.3e-23 112.1 164 48.8
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 4.3e-23 112.1 192 42.2
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 5.6e-23 111.7 167 47.3
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 5.6e-23 111.7 167 44.3
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.6e-23 111.7 173 45.1
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 7.3e-23 111.3 169 46.7
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 7.3e-23 111.3 161 49.1
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 7.3e-23 111.3 168 45.2
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 9.5e-23 110.9 166 45.8
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 9.5e-23 110.9 157 47.1
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 9.5e-23 110.9 162 45.7
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 1.2e-22 110.5 169 44.4
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 2.1e-22 109.8 160 48.8
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.1e-22 109.8 166 43.4
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.1e-22 109.8 166 44.0
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 2.1e-22 109.8 167 44.3
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.6e-22 109.0 180 43.9
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 3.6e-22 109.0 155 49.7
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 4.7e-22 108.6 170 47.1
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.2e-22 108.2 174 44.8
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 6.2e-22 108.2 162 48.1
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 6.2e-22 108.2 168 44.6
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 6.2e-22 108.2 166 43.4
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 8.0e-22 107.8 166 44.0
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-21 107.1 170 45.3
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.8e-21 106.7 169 45.0
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.8e-21 106.7 161 46.0
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 1.8e-21 106.7 166 42.2
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.8e-21 106.7 165 45.5
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 2.3e-21 106.3 157 45.2
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 2.3e-21 106.3 157 45.2
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 2.3e-21 106.3 157 45.2
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 3.1e-21 105.9 166 46.4
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 4.0e-21 105.5 172 42.4
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 8.9e-21 104.4 159 47.2
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 8.9e-21 104.4 161 47.8
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.6e-20 102.8 164 45.7
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 4.4e-20 102.1 159 44.7
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 4.4e-20 102.1 157 46.5
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 4.4e-20 102.1 163 43.6
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 5.8e-20 101.7 167 43.7
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 7.5e-20 101.3 165 43.6
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 9.8e-20 100.9 163 45.4
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 1.3e-19 100.5 164 42.1
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 2.2e-19 99.8 163 43.6
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.7e-19 99.0 155 45.8
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 4.9e-19 98.6 165 41.8
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.1e-18 97.4 160 44.4
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 1.4e-18 97.1 133 47.4
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.9e-18 96.7 172 41.9
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 2.4e-18 96.3 173 40.5
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 2.4e-18 96.3 171 42.7
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.2e-18 95.9 170 39.4
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 4.1e-18 95.5 156 44.2
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 5.4e-18 95.1 161 44.7
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 5.4e-18 95.1 169 41.4
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 7.0e-18 94.7 173 39.3
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 7.0e-18 94.7 166 39.8
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 9.2e-18 94.4 156 42.9
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 1.6e-17 93.6 166 43.4
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 2.1e-17 93.2 161 44.7
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 2.1e-17 93.2 171 41.5
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 3.5e-17 92.4 167 42.5
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 7.8e-17 91.3 171 42.1
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.0e-16 90.9 162 44.4
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 3.9e-16 89.0 55 87.3
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 2.5e-15 86.3 126 44.4
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 3.3e-15 85.9 169 40.8
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 5.6e-15 85.1 155 42.6
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 2.1e-14 83.2 92 58.7
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.6e-14 82.4 163 38.0
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 4.7e-14 82.0 161 39.1
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 6.2e-14 81.6 117 42.7
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 6.2e-14 81.6 169 42.0
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 8.1e-14 81.3 168 39.3
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.1e-13 80.9 156 42.3
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.1e-13 80.9 121 45.5
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 2.3e-13 79.7 99 51.5
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 6.8e-13 78.2 105 47.6
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.5e-12 77.0 156 37.8
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.5e-12 77.0 158 39.2
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 3.4e-12 75.9 166 38.0
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 7.5e-12 74.7 100 45.0
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 9.9e-12 74.3 97 46.4
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.3e-11 73.9 147 41.5
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.3e-11 73.9 160 38.1
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 2.2e-11 73.2 98 52.0
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 6.4e-11 71.6 155 36.8
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.1e-10 70.9 220 32.3
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 1.9e-10 70.1 160 38.8
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 3.2e-10 69.3 161 36.6
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 7.1e-10 68.2 111 43.2
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 9.2e-10 67.8 156 35.9
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 1.3e-08 63.9 100 45.0
MD04G1127100 Malus domestica HOM05D003527 ORTHO05D004099 1.5e-07 60.5 64 50.0
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.6e-06 57.0 160 35.0
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 3.6e-06 55.8 108 39.8


User provided reference genes

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