Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 6.7e-60 233.8 116 100.0
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 4.0e-57 224.6 116 97.4
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 2.5e-51 205.3 116 89.7
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 1.2e-48 196.4 116 84.5
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 6.5e-47 190.7 117 88.0
Sp7g08770 Schrenkiella parvula HOM05D010528 ORTHO05D005174 8.5e-47 190.3 116 84.5
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 2.3e-44 182.2 116 81.9
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 2.3e-44 182.2 116 81.9
A10p33240 Brassica napus HOM05D010528 ORTHO05D005174 2.4e-41 172.2 116 78.4
BraA10t45352Z Brassica rapa HOM05D010528 ORTHO05D005174 2.4e-41 172.2 116 78.4
A03p00680 Brassica napus HOM05D010528 ORTHO05D005174 2.6e-40 168.7 116 80.2
A03p00720 Brassica napus HOM05D010528 ORTHO05D005174 2.6e-40 168.7 116 80.2
C03p00950 Brassica napus HOM05D010528 ORTHO05D005174 2.6e-40 168.7 116 80.2
BolC3t12657H Brassica oleracea HOM05D010528 ORTHO05D005174 2.6e-40 168.7 116 80.2
BraA03t09457Z Brassica rapa HOM05D010528 ORTHO05D005174 2.6e-40 168.7 116 80.2
BcaB01g06161 Brassica carinata HOM05D010528 ORTHO05D005174 1.1e-38 163.3 116 78.4
BcaNung05923 Brassica carinata HOM05D010528 ORTHO05D005174 1.9e-38 162.5 112 77.7
BcaC06g31989 Brassica carinata HOM05D010528 ORTHO05D005174 1.1e-35 153.3 117 71.8
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 2.3e-28 129.0 118 64.4
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 5.2e-28 127.9 117 66.7
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 3.8e-23 111.7 118 56.8
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 9.8e-11 70.5 111 40.5
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.7e-10 69.7 111 38.7
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 8.3e-10 67.4 78 51.3
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 1.8e-09 66.2 78 51.3
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 4.1e-09 65.1 114 40.4
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.2e-08 63.5 102 44.1
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 1.6e-08 63.2 83 45.8
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.0e-08 62.8 83 51.8
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.7e-08 62.4 83 45.8
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 2.7e-08 62.4 78 50.0
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.5e-08 62.0 83 45.8
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 3.5e-08 62.0 79 48.1
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.5e-08 61.6 82 50.0
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 7.7e-08 60.8 110 36.4
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-07 60.5 82 47.6
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.0e-07 60.5 82 47.6
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 1.0e-07 60.5 114 36.8
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.3e-07 60.1 80 46.2
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.7e-07 59.7 79 48.1
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 2.3e-07 59.3 80 52.5
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 2.9e-07 58.9 83 51.8
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.9e-07 58.9 78 50.0
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 6.6e-07 57.8 79 44.3
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 8.6e-07 57.4 109 43.1
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 8.6e-07 57.4 78 47.4
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 1.1e-06 57.0 104 44.2
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.5e-06 56.6 98 37.8
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 1.5e-06 56.6 83 50.6
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.5e-06 56.6 109 42.2
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 1.5e-06 56.6 79 48.1
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 1.9e-06 56.2 82 46.3
Pp3c23_21800 Physcomitrium patens HOM05D011262 ORTHO05D012767 2.5e-06 55.8 55 45.5
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.3e-06 55.5 109 40.4
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 3.3e-06 55.5 88 40.9
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 4.2e-06 55.1 115 39.1
Gorai.006G173200 Gossypium raimondii HOM05D036294 ORTHO05D036268 4.2e-06 55.1 77 44.2
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 4.2e-06 55.1 115 41.7
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 5.5e-06 54.7 82 40.2
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 5.5e-06 54.7 77 48.1
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 7.2e-06 54.3 62 48.4
Pp3c20_3210 Physcomitrium patens HOM05D011262 ORTHO05D012767 7.2e-06 54.3 55 45.5
Pp3c8_24610 Physcomitrium patens HOM05D011262 ORTHO05D012767 9.5e-06 53.9 59 42.4
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 9.5e-06 53.9 123 39.8


User provided reference genes

Program Settings