Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11490 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 1.8e-108 396.0 200 100.0
AL6G11480 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 3.9e-31 139.0 113 69.9
AT5G02240 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 1.5e-30 137.1 113 68.1
Sp6g40210 Schrenkiella parvula HOM05D003730 ORTHO05D004458 4.3e-30 135.6 113 67.3
Carub.0006s0108 Capsella rubella HOM05D003730 ORTHO05D004458 1.2e-29 134.0 113 66.4
C09p74290 Brassica napus HOM05D003730 ORTHO05D004458 1.6e-29 133.7 113 66.4
BolC9t60162H Brassica oleracea HOM05D003730 ORTHO05D004458 1.6e-29 133.7 113 66.4
A10p33380 Brassica napus HOM05D003730 ORTHO05D004458 8.0e-29 131.3 113 65.5
BraA10t45369Z Brassica rapa HOM05D003730 ORTHO05D004458 8.0e-29 131.3 113 65.5
Thhalv10014474m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 1.4e-28 130.6 113 66.4
CARHR211130 Cardamine hirsuta HOM05D003730 ORTHO05D004458 5.2e-28 128.6 113 64.6
THA.LOC104816264 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 1.5e-27 127.1 116 62.1
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 9.8e-27 124.4 107 65.4
PGR031G0852 Punica granatum HOM05D003730 ORTHO05D004458 4.9e-26 122.1 113 61.1
FAN02G4300 Fragaria x ananassa HOM05D003730 ORTHO05D004458 1.9e-25 120.2 111 57.7
Actinidia26475 Actinidia chinensis HOM05D003730 ORTHO05D004458 7.0e-25 118.2 113 58.4
RcHm_v2.0_Chr3g0466371 Rosa chinensis HOM05D003730 ORTHO05D004458 9.2e-25 117.9 113 56.6
Cpa.g.sc169.22 Carica papaya HOM05D003730 ORTHO05D004458 1.2e-24 117.5 113 58.4
Medtr4g021815 Medicago truncatula HOM05D003730 ORTHO05D004458 1.2e-24 117.5 113 58.4
Ciclev10012166m.g Citrus clementina HOM05D003730 ORTHO05D004458 1.6e-24 117.1 113 57.5
DCAR_012103 Daucus carota HOM05D003730 ORTHO05D004458 1.6e-24 117.1 113 57.5
FAN09G4346 Fragaria x ananassa HOM05D003730 ORTHO05D004458 1.6e-24 117.1 113 55.8
SMO141G0146 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 1.6e-24 117.1 113 56.6
SEGI_20216 Sequoiadendron giganteum HOM05D003730 ORTHO05D004458 1.6e-24 117.1 113 58.4
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 1.6e-24 117.1 113 58.4
arahy.Tifrunner.gnm1.ann1.E6NKCB Arachis hypogaea HOM05D003730 ORTHO05D004458 2.0e-24 116.7 113 56.6
arahy.Tifrunner.gnm1.ann1.L41CIL Arachis hypogaea HOM05D003730 ORTHO05D004458 2.0e-24 116.7 113 56.6
MSTRG.5656 Avicennia marina HOM05D003730 ORTHO05D004458 2.0e-24 116.7 113 57.5
CAN.G1685.1 Capsicum annuum HOM05D003730 ORTHO05D004458 2.7e-24 116.3 113 57.5
Cc06_g02520 Coffea canephora HOM05D003730 ORTHO05D004458 2.7e-24 116.3 113 56.6
FAN05G3435 Fragaria x ananassa HOM05D003730 ORTHO05D004458 2.7e-24 116.3 113 56.6
ECA248G3650 Erigeron canadensis HOM05D003730 ORTHO05D004458 3.5e-24 115.9 113 56.6
CANSAT54G2707 Cannabis sativa HOM05D003730 ORTHO05D004458 4.6e-24 115.5 113 56.6
FvH4_6g13500 Fragaria vesca HOM05D003730 ORTHO05D004458 4.6e-24 115.5 113 54.9
FAN14G3787 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.6e-24 115.5 113 54.9
THA.LOC104823415 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 4.6e-24 115.5 113 56.6
Lj3A966G51 Lonicera japonica HOM05D003730 ORTHO05D004458 6.0e-24 115.2 113 57.5
Manes.08G088900 Manihot esculenta HOM05D003730 ORTHO05D004458 6.0e-24 115.2 113 57.5
Oeu036136.3 Olea europaea HOM05D003730 ORTHO05D004458 6.0e-24 115.2 113 57.5
Prupe.6G257200 Prunus persica HOM05D003730 ORTHO05D004458 6.0e-24 115.2 113 55.8
VMungo0331G0374 Vigna mungo HOM05D003730 ORTHO05D004458 6.0e-24 115.2 113 56.6
Cfa017360 Carpinus fangiana HOM05D003730 ORTHO05D004458 7.8e-24 114.8 113 55.8
TWI74G0344 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 7.8e-24 114.8 113 56.6
vmacro08647 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 7.8e-24 114.8 113 56.6
vmacro20165 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 7.8e-24 114.8 113 57.5
HanXRQChr01g0003071 Helianthus annuus HOM05D003730 ORTHO05D004458 1.0e-23 114.4 113 55.8
Zm00001eb062770 Zea mays HOM05D003730 ORTHO05D004458 1.0e-23 114.4 113 55.8
Lj3g0005938 Lotus japonicus HOM05D003730 ORTHO05D004458 1.3e-23 114.0 113 55.8
Os03g0822200 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 1.3e-23 114.0 113 56.6
TWI77G0750 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 1.3e-23 114.0 113 56.6
Oeu010095.1 Olea europaea HOM05D003730 ORTHO05D004458 1.7e-23 113.6 113 56.6
Sopen09g005650 Solanum pennellii HOM05D003730 ORTHO05D004458 1.7e-23 113.6 113 55.8
TPR.G5554 Trifolium pratense HOM05D003730 ORTHO05D004458 1.7e-23 113.6 113 56.6
TAR623G1158 Trochodendron aralioides HOM05D003730 ORTHO05D004458 1.7e-23 113.6 113 56.6
Aqoxy2G02240 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 56.6
CiPaw.10G146400 Carya illinoinensis HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 54.9
Migut.J00321 Erythranthe guttata HOM05D003730 ORTHO05D004458 2.3e-23 113.2 110 56.4
Lsat_1_v5_gn_5_149640 Lactuca sativa HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 56.6
MD04G1130500 Malus domestica HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 54.9
Manes.09G092700 Manihot esculenta HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 57.5
Nn2g13382 Nelumbo nucifera HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 54.9
Sc20g0005000 Simmondsia chinensis HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 57.5
PGSC0003DMG400008830 Solanum tuberosum HOM05D003730 ORTHO05D004458 2.3e-23 113.2 113 55.8
Actinidia13152 Actinidia chinensis HOM05D003730 ORTHO05D004458 3.0e-23 112.8 113 54.9
CSS0040011 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 3.0e-23 112.8 113 55.8
Lalb_Chr03g0042331 Lupinus albus HOM05D003730 ORTHO05D004458 3.0e-23 112.8 113 55.8
CSS0030439 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 3.9e-23 112.5 113 55.8
AUR62041751 Chenopodium quinoa HOM05D003730 ORTHO05D004458 3.9e-23 112.5 113 56.6
MELO3C003137.2 Cucumis melo HOM05D003730 ORTHO05D004458 3.9e-23 112.5 113 55.8
QL07p048679 Quercus lobata HOM05D003730 ORTHO05D004458 3.9e-23 112.5 111 54.1
CsaV3_4G025080 Cucumis sativus L. HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 55.8
Gohir.A09G155032 Gossypium hirsutum HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 54.9
Gorai.006G171900 Gossypium raimondii HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 54.9
Lj2A93T84 Lonicera japonica HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 54.9
Sp4g20020 Schrenkiella parvula HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 54.9
Solyc09g010930.4 Solanum lycopersicum HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 54.9
TPR.G1677 Trifolium pratense HOM05D003730 ORTHO05D004458 5.0e-23 112.1 113 54.9
Haze_20813 Corylus avellana HOM05D003730 ORTHO05D004458 6.6e-23 111.7 112 54.5
Hma1.2p1_0936F.1_g238830 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 6.6e-23 111.7 113 54.0
Hma1.2p1_1889F.1_g306630 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 6.6e-23 111.7 113 57.5
Potri.006G086800 Populus trichocarpa HOM05D003730 ORTHO05D004458 6.6e-23 111.7 116 55.2
Ca_07559_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 8.6e-23 111.3 113 54.9
Medtr7g062140 Medicago truncatula HOM05D003730 ORTHO05D004458 8.6e-23 111.3 113 54.0
Phvul.010G011300 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 8.6e-23 111.3 113 54.9
Rhsim05G0193900 Rhododendron simsii HOM05D003730 ORTHO05D004458 8.6e-23 111.3 113 55.8
VMungo1383G3507 Vigna mungo HOM05D003730 ORTHO05D004458 8.6e-23 111.3 113 54.9
Atru.chr8.1989 Acer truncatum HOM05D003730 ORTHO05D004458 1.1e-22 110.9 113 54.9
AUR62041348 Chenopodium quinoa HOM05D003730 ORTHO05D004458 1.1e-22 110.9 113 55.8
Thhalv10016917m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 1.1e-22 110.9 113 54.9
MD12G1143700 Malus domestica HOM05D003730 ORTHO05D004458 1.1e-22 110.9 113 54.9
Peaxi162Scf00165g00819 Petunia axillaris HOM05D003730 ORTHO05D004458 1.1e-22 110.9 113 54.0
C04p66100 Brassica napus HOM05D003730 ORTHO05D004458 1.5e-22 110.5 113 54.0
BolC4t28114H Brassica oleracea HOM05D003730 ORTHO05D004458 1.5e-22 110.5 113 54.0
Ca_27652_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 1.5e-22 110.5 113 54.0
Psat3g138600 Pisum sativum HOM05D003730 ORTHO05D004458 1.5e-22 110.5 113 54.9
A04p28820 Brassica napus HOM05D003730 ORTHO05D004458 1.9e-22 110.2 113 54.0
BraA04t18359Z Brassica rapa HOM05D003730 ORTHO05D004458 1.9e-22 110.2 113 54.0
CARHR131920 Cardamine hirsuta HOM05D003730 ORTHO05D004458 1.9e-22 110.2 113 54.0
Gohir.D09G150600 Gossypium hirsutum HOM05D003730 ORTHO05D004458 1.9e-22 110.2 113 54.0
Sed0018240 Sechium edule HOM05D003730 ORTHO05D004458 1.9e-22 110.2 113 54.0
Aa31LG5G23160 Aethionema arabicum HOM05D003730 ORTHO05D004458 2.5e-22 109.8 113 54.0
EL10As1g23062 Beta vulgaris HOM05D003730 ORTHO05D004458 2.5e-22 109.8 113 54.9
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 2.5e-22 109.8 113 54.9
Psat7g235680 Pisum sativum HOM05D003730 ORTHO05D004458 2.5e-22 109.8 113 54.9
Sabra06G0066200 Salix brachista HOM05D003730 ORTHO05D004458 2.5e-22 109.8 113 55.8
DCAR_024060 Daucus carota HOM05D003730 ORTHO05D004458 3.3e-22 109.4 107 57.0
Lalb_Chr12g0209561 Lupinus albus HOM05D003730 ORTHO05D004458 3.3e-22 109.4 110 54.5
BcaB02g09264 Brassica carinata HOM05D003730 ORTHO05D004458 4.3e-22 109.0 113 54.0
BcaB02g09265 Brassica carinata HOM05D003730 ORTHO05D004458 4.3e-22 109.0 113 54.0
PSO339G5845 Papaver somniferum HOM05D003730 ORTHO05D004458 4.3e-22 109.0 113 54.0
PSO513G0074 Papaver somniferum HOM05D003730 ORTHO05D004458 4.3e-22 109.0 113 54.0
BcaC02g07503 Brassica carinata HOM05D003730 ORTHO05D004458 5.6e-22 108.6 113 54.0
Duzib093G1851 Durio zibethinus HOM05D003730 ORTHO05D004458 5.6e-22 108.6 113 53.1
Duzib128G1894 Durio zibethinus HOM05D003730 ORTHO05D004458 5.6e-22 108.6 113 53.1
Lj1g0003421 Lotus japonicus HOM05D003730 ORTHO05D004458 5.6e-22 108.6 113 53.1
AT2G37660 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 7.3e-22 108.2 113 53.1
arahy.Tifrunner.gnm1.ann1.CCZS04 Arachis hypogaea HOM05D003730 ORTHO05D004458 7.3e-22 108.2 113 54.0
BcaB06g29015 Brassica carinata HOM05D003730 ORTHO05D004458 7.3e-22 108.2 112 53.6
Nitab4.5_0004639g0020 Nicotiana tabacum HOM05D003730 ORTHO05D004458 7.3e-22 108.2 113 53.1
Os05g0110300 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 7.3e-22 108.2 113 54.0
Phvul.008G119600 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 7.3e-22 108.2 113 54.0
Hund10632 Selenicereus undatus HOM05D003730 ORTHO05D004458 7.3e-22 108.2 113 54.0
PGR004G0886 Punica granatum HOM05D003730 ORTHO05D004458 9.5e-22 107.8 113 54.9
ATR0559G007 Amborella trichopoda HOM05D003730 ORTHO05D004458 1.2e-21 107.5 114 56.1
arahy.Tifrunner.gnm1.ann1.D1PGNE Arachis hypogaea HOM05D003730 ORTHO05D004458 1.2e-21 107.5 113 54.0
A05p08310 Brassica napus HOM05D003730 ORTHO05D004458 1.2e-21 107.5 113 53.1
Carub.0004s1959 Capsella rubella HOM05D003730 ORTHO05D004458 1.2e-21 107.5 113 53.1
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 1.2e-21 107.5 113 53.1
SalBow4G0960 Salvia bowleyana HOM05D003730 ORTHO05D004458 1.2e-21 107.5 113 54.0
Zm00001eb355850 Zea mays HOM05D003730 ORTHO05D004458 1.2e-21 107.5 113 53.1
MSTRG.5810 Avicennia marina HOM05D003730 ORTHO05D004458 2.1e-21 106.7 110 55.5
BcaC02g11887 Brassica carinata HOM05D003730 ORTHO05D004458 2.1e-21 106.7 113 53.1
C04p10280 Brassica napus HOM05D003730 ORTHO05D004458 2.1e-21 106.7 113 53.1
BolC4t22626H Brassica oleracea HOM05D003730 ORTHO05D004458 2.1e-21 106.7 113 53.1
HPP92_018136 Vanilla planifolia HOM05D003730 ORTHO05D004458 2.1e-21 106.7 113 53.1
Glyma.18G182600 Glycine max HOM05D003730 ORTHO05D004458 2.8e-21 106.3 113 53.1
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 3.6e-21 105.9 113 52.2
COL.COLO4_14783 Corchorus olitorius HOM05D003730 ORTHO05D004458 3.6e-21 105.9 113 51.3
ClCG04G008110 Citrullus lanatus HOM05D003730 ORTHO05D004458 4.7e-21 105.5 109 54.1
MBI14_g12122_MAGBIO Magnolia biondii HOM05D003730 ORTHO05D004458 4.7e-21 105.5 113 53.1
Thecc.05G037600 Theobroma cacao HOM05D003730 ORTHO05D004458 4.7e-21 105.5 110 52.7
Eucgr.A01273 Eucalyptus grandis HOM05D003730 ORTHO05D004458 1.4e-20 104.0 113 53.1
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 1.4e-20 104.0 113 51.3
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 1.8e-20 103.6 113 51.3
CDE08G1340 Ceratophyllum demersum HOM05D000714 ORTHO05D000544 2.3e-20 103.2 107 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3727 Anthoceros agrestis HOM05D003730 ORTHO05D004458 4.0e-20 102.4 110 53.6
Zm00001eb266940 Zea mays HOM05D003730 ORTHO05D004458 8.9e-20 101.3 113 50.4
Pp3c14_3760 Physcomitrium patens HOM05D003730 ORTHO05D004458 1.2e-19 100.9 113 50.4
SMO118G0186 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 1.5e-19 100.5 110 52.7
BcaB06g29016 Brassica carinata HOM05D003730 ORTHO05D004458 2.6e-19 99.8 111 51.4
Pp3c15_16990 Physcomitrium patens HOM05D003730 ORTHO05D004458 1.7e-18 97.1 110 48.2
Mapoly0187s0017 Marchantia polymorpha HOM05D003730 ORTHO05D004458 4.9e-18 95.5 110 50.9
Pp3c9_11060 Physcomitrium patens HOM05D003730 ORTHO05D004458 8.3e-18 94.7 110 46.4
CBR_g8964 Chara braunii HOM05D003730 ORTHO05D004458 4.6e-16 89.0 113 46.0
PSO063G2886 Papaver somniferum HOM05D003730 ORTHO05D004458 7.8e-16 88.2 113 46.0
PSO339G5717 Papaver somniferum HOM05D003730 ORTHO05D004458 7.8e-16 88.2 113 46.0
PSO541G3402 Papaver somniferum HOM05D003730 ORTHO05D004458 1.3e-15 87.4 113 48.7
Nn3g16293 Nelumbo nucifera HOM05D003730 ORTHO05D004458 3.0e-15 86.3 113 46.9
PSO063G2117 Papaver somniferum HOM05D003730 ORTHO05D004458 2.5e-14 83.2 110 47.3
PSO339G0047 Papaver somniferum HOM05D003730 ORTHO05D004458 2.5e-14 83.2 110 47.3
Nitab4.5_0000705g0180 Nicotiana tabacum HOM05D003730 ORTHO05D004458 4.4e-11 72.4 42 78.6
VMungo0331G1569 Vigna mungo HOM05D003730 ORTHO05D004458 2.9e-10 69.7 46 73.9
Cre06.g279850 Chlamydomonas reinhardtii HOM05D003730 ORTHO05D004458 1.9e-06 57.0 104 31.7
MCO14G206 Micromonas commoda HOM05D003730 ORTHO05D004458 1.9e-06 57.0 107 36.4


User provided reference genes

Program Settings