Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 3.8e-30 134.4 80 100.0
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 9.7e-26 119.8 82 79.3
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.1e-24 114.4 79 75.9
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.1e-21 106.3 80 81.2
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 4.7e-20 100.9 81 70.4
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 3.0e-19 98.2 80 66.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 3.0e-19 98.2 80 66.2
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 3.9e-19 97.8 80 67.5
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 1.5e-18 95.9 80 65.0
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 5.7e-18 94.0 80 63.8
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 5.7e-18 94.0 64 73.4
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 2.2e-17 92.0 64 71.9
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 9.1e-16 86.7 67 68.7
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 6.5e-14 80.5 66 68.2
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 6.5e-14 80.5 66 68.2
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 1.5e-13 79.3 77 58.4
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 1.5e-13 79.3 77 58.4
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 2.7e-12 75.1 67 68.7
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.1e-10 69.7 52 67.3
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.6e-10 68.6 59 55.9
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.6e-10 68.6 59 55.9
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.6e-10 68.6 59 55.9
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.6e-10 68.6 49 65.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.4e-10 67.8 61 55.7
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 2.2e-09 65.5 39 74.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 3.7e-09 64.7 48 62.5
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.7e-09 64.7 39 74.4
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.7e-09 64.7 39 74.4
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.8e-09 64.3 39 71.8
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 6.3e-09 63.9 49 61.2
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.1e-08 63.2 39 71.8
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-08 63.2 38 73.7
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.4e-08 62.8 38 68.4
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.4e-08 62.8 38 73.7
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.8e-08 62.4 50 58.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.4e-08 62.0 39 69.2
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.4e-08 62.0 48 60.4
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.4e-08 62.0 38 71.1
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.1e-08 61.6 40 65.0
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.1e-08 61.6 40 65.0
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 3.1e-08 61.6 40 65.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.1e-08 61.6 40 65.0
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.1e-08 61.6 38 71.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.1e-08 61.2 46 60.9
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 4.1e-08 61.2 38 68.4
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 4.1e-08 61.2 54 51.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 5.3e-08 60.8 42 64.3
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 5.3e-08 60.8 41 63.4
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 5.3e-08 60.8 42 64.3
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 5.3e-08 60.8 38 68.4
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 7.0e-08 60.5 39 69.2
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 7.0e-08 60.5 47 59.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 9.1e-08 60.1 39 64.1
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.1e-08 60.1 36 72.2
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 9.1e-08 60.1 36 72.2
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 9.1e-08 60.1 58 53.4
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 9.1e-08 60.1 36 66.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.2e-07 59.7 38 65.8
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.2e-07 59.7 44 59.1
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.2e-07 59.7 44 59.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.2e-07 59.7 36 72.2
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.2e-07 59.7 38 68.4
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.6e-07 59.3 41 61.0
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 2.0e-07 58.9 43 60.5
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.0e-07 58.9 38 65.8
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.0e-07 58.9 47 57.4
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.0e-07 58.9 43 65.1
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.7e-07 58.5 36 69.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.7e-07 58.5 36 69.4
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 3.5e-07 58.2 48 56.2
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.5e-07 58.2 43 55.8
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 3.5e-07 58.2 39 71.8
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 3.5e-07 58.2 41 63.4
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.5e-07 57.8 43 58.1
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 4.5e-07 57.8 36 66.7
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.5e-07 57.8 36 69.4
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.5e-07 57.8 50 56.0
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 4.5e-07 57.8 39 66.7
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 5.9e-07 57.4 50 54.0
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 5.9e-07 57.4 50 54.0
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 5.9e-07 57.4 38 65.8
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 7.7e-07 57.0 38 68.4
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 7.7e-07 57.0 40 60.0
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 7.7e-07 57.0 41 65.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 7.7e-07 57.0 40 60.0
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.7e-07 57.0 38 68.4
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 7.7e-07 57.0 39 64.1
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.0e-06 56.6 39 64.1
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.0e-06 56.6 50 54.0
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.0e-06 56.6 38 68.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.3e-06 56.2 36 66.7
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.3e-06 56.2 38 63.2
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.3e-06 56.2 38 63.2
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.3e-06 56.2 38 63.2
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.7e-06 55.8 39 59.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.7e-06 55.8 39 59.0
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.7e-06 55.8 41 68.3
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.2e-06 55.5 39 61.5
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.2e-06 55.5 38 63.2
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 2.2e-06 55.5 34 67.6
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 2.9e-06 55.1 41 58.5
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.9e-06 55.1 41 68.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.9e-06 55.1 36 63.9
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 3.8e-06 54.7 36 66.7
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.8e-06 54.7 38 63.2
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 3.8e-06 54.7 38 60.5
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.5e-06 53.9 38 60.5
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 6.5e-06 53.9 37 62.2
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 6.5e-06 53.9 39 61.5
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 6.5e-06 53.9 40 60.0
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.5e-06 53.9 59 49.2
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 8.5e-06 53.5 39 56.4
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 8.5e-06 53.5 39 56.4


User provided reference genes

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