Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.1e-47 193.0 97 100.0
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 9.3e-31 136.7 71 90.1
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-30 136.3 71 88.7
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 7.9e-30 133.7 71 85.9
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.3e-29 132.9 71 87.3
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.3e-29 132.1 71 85.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 5.1e-29 131.0 71 84.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 5.1e-29 131.0 71 84.5
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.5e-28 128.6 71 80.3
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-27 126.3 72 83.3
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.3e-27 126.3 72 83.3
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.6e-27 125.9 73 82.2
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 9.9e-25 116.7 97 61.9
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.7e-22 108.6 71 66.2
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 8.2e-19 97.1 78 59.0
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 8.2e-19 97.1 71 62.0
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.4e-18 96.3 71 62.0
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.8e-18 95.9 71 60.6
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.8e-18 95.9 71 60.6
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.4e-18 95.5 71 60.6
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.1e-18 95.1 71 62.0
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.0e-18 94.7 71 59.2
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 4.0e-18 94.7 71 59.2
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 4.0e-18 94.7 71 59.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 4.0e-18 94.7 71 59.2
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 4.0e-18 94.7 72 56.9
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 4.0e-18 94.7 72 56.9
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 4.0e-18 94.7 71 59.2
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 5.3e-18 94.4 72 58.3
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.3e-18 94.4 72 56.9
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.3e-18 94.4 71 60.6
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 6.9e-18 94.0 71 59.2
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 9.0e-18 93.6 72 55.6
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 9.0e-18 93.6 72 56.9
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.2e-17 93.2 71 59.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.2e-17 93.2 71 60.6
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.5e-17 92.8 71 59.2
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 2.0e-17 92.4 71 59.2
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.0e-17 92.4 72 55.6
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.0e-17 92.4 71 57.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 2.0e-17 92.4 71 60.6
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.0e-17 92.4 71 57.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.6e-17 92.0 71 57.7
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.6e-17 92.0 72 55.6
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 2.6e-17 92.0 71 57.7
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 3.4e-17 91.7 71 59.2
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.4e-17 91.7 71 56.3
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.4e-17 91.7 71 56.3
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 4.5e-17 91.3 71 54.9
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 4.5e-17 91.3 71 56.3
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 4.5e-17 91.3 72 55.6
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.5e-17 91.3 71 59.2
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 4.5e-17 91.3 71 56.3
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 5.8e-17 90.9 72 55.6
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 5.8e-17 90.9 72 54.2
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 5.8e-17 90.9 71 57.7
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 5.8e-17 90.9 71 59.2
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 7.6e-17 90.5 72 58.3
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 7.6e-17 90.5 71 54.9
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 7.6e-17 90.5 71 56.3
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 7.6e-17 90.5 71 60.6
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 7.6e-17 90.5 71 56.3
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.0e-16 90.1 71 54.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.0e-16 90.1 71 57.7
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.3e-16 89.7 71 56.3
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.7e-16 89.4 71 56.3
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.7e-16 89.4 98 46.9
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.7e-16 89.4 71 54.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.7e-16 89.4 71 54.9
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.7e-16 89.4 71 59.2
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 2.2e-16 89.0 72 55.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.2e-16 89.0 71 54.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 2.9e-16 88.6 71 54.9
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.9e-16 87.8 71 53.5
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 4.9e-16 87.8 71 54.9
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 4.9e-16 87.8 72 50.0
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 4.9e-16 87.8 71 53.5
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 6.5e-16 87.4 71 56.3
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 6.5e-16 87.4 69 55.1
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 6.5e-16 87.4 57 68.4
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 6.5e-16 87.4 71 54.9
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 8.4e-16 87.0 68 54.4
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 8.4e-16 87.0 71 52.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 8.4e-16 87.0 71 52.1
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 8.4e-16 87.0 71 52.1
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.1e-15 86.7 71 53.5
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.1e-15 86.7 72 52.8
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.1e-15 86.7 72 52.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.4e-15 86.3 71 53.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.9e-15 85.9 71 54.9
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.9e-15 85.9 71 54.9
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.9e-15 85.9 71 53.5
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.5e-15 85.5 71 53.5
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 2.5e-15 85.5 71 56.3
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.5e-15 85.5 71 52.1
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.5e-15 85.5 71 54.9
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 3.2e-15 85.1 71 54.9
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.5e-15 84.3 71 52.1
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 5.5e-15 84.3 71 49.3
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 5.5e-15 84.3 71 52.1
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 5.5e-15 84.3 71 52.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 7.1e-15 84.0 71 53.5
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.2e-14 83.2 71 50.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-14 82.8 71 49.3
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.7e-14 82.0 71 50.7
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-14 82.0 71 49.3
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-14 82.0 71 50.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.5e-14 81.6 71 52.1
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.5e-14 81.6 71 50.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.6e-14 81.3 71 49.3
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.0e-14 80.9 71 49.3
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.0e-14 80.9 68 51.5
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.0e-14 80.9 71 49.3
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.9e-14 80.5 71 47.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.9e-14 80.5 71 47.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 7.9e-14 80.5 70 51.4
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-13 80.1 71 49.3
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-13 80.1 71 49.3
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.0e-13 80.1 71 50.7
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.3e-13 79.7 71 47.9
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.3e-13 79.7 71 50.7
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.3e-13 79.0 71 49.3
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.5e-12 75.5 84 48.8
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.7e-12 74.3 71 47.9
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.3e-11 73.2 71 46.5
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.6e-11 72.8 70 47.1
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 2.2e-11 72.4 71 45.1
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 6.3e-11 70.9 84 41.7
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.4e-10 69.7 43 67.4
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-09 66.6 57 52.6
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-09 66.6 57 52.6
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 3.4e-09 65.1 53 56.6
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.0e-08 63.5 59 44.1
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 8.5e-08 60.5 50 56.0
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 5.5e-07 57.8 52 51.9
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 4.6e-06 54.7 57 38.6


User provided reference genes

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