Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 6.1e-283 976.9 510 100.0
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 6.8e-282 973.4 510 99.2
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.4e-279 965.7 510 98.0
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.8e-279 965.3 510 98.2
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 9.2e-279 963.0 510 97.6
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.1e-276 956.1 510 97.5
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.5e-276 954.9 510 96.1
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 1.4e-274 949.1 510 95.7
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.8e-274 948.7 510 95.5
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.0e-273 945.3 510 94.7
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.6e-273 944.9 510 95.1
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 5.7e-273 943.7 510 95.1
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 6.4e-272 940.3 510 93.9
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 3.5e-270 934.5 510 94.1
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.0e-269 932.9 510 93.7
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.3e-269 932.6 510 93.5
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 2.3e-269 931.8 510 93.5
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 5.4e-263 910.6 494 95.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 1.0e-261 906.4 510 91.4
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 1.3e-261 906.0 510 91.2
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 1.3e-261 906.0 510 91.2
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 3.9e-261 904.4 510 91.0
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 3.3e-260 901.4 494 93.7
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 4.7e-259 897.5 511 88.5
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.2e-257 892.9 510 88.4
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 3.4e-257 891.3 511 88.3
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 3.4e-257 891.3 510 88.8
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 4.4e-257 891.0 511 88.5
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 4.4e-257 891.0 511 88.8
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 9.8e-257 889.8 511 88.3
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 9.8e-257 889.8 510 88.4
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 1.3e-256 889.4 510 88.0
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.9e-256 887.5 510 88.4
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.4e-255 885.9 510 88.0
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 2.4e-255 885.2 510 88.6
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 5.4e-255 884.0 510 87.6
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 7.1e-255 883.6 510 87.1
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 1.2e-254 882.9 510 86.7
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 2.7e-254 881.7 510 86.3
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 3.5e-254 881.3 510 87.8
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 6.0e-254 880.6 510 87.1
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 87.5
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 87.1
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 87.6
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 3.9e-253 877.9 511 87.1
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 86.7
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 2.5e-252 875.2 510 87.3
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 2.5e-252 875.2 510 86.3
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 86.1
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 5.6e-252 874.0 511 86.9
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 7.3e-252 873.6 510 86.5
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 7.3e-252 873.6 510 86.5
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 9.5e-252 873.2 510 86.3
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.6e-251 872.5 510 86.1
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 85.5
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 86.7
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 85.9
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 86.1
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 85.9
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 85.9
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 87.5
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 87.6
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 85.5
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.4e-250 869.4 510 85.3
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.8e-250 869.0 510 86.3
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.8e-250 869.0 511 86.1
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 4.0e-250 867.8 511 85.7
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 4.0e-250 867.8 510 85.5
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 2.6e-249 865.1 510 85.5
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.8e-249 864.0 512 85.5
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 9.9e-249 863.2 510 86.3
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 9.9e-249 863.2 510 86.1
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 3.8e-248 861.3 510 85.7
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 6.4e-248 860.5 509 85.1
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.1e-247 859.8 510 84.7
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.1e-247 859.8 510 85.3
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 1.4e-247 859.4 510 84.3
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 84.9
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 85.7
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 85.1
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.7e-246 855.1 511 85.1
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 3.5e-246 854.7 527 83.7
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 3.9e-245 851.3 510 84.3
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 3.9e-245 851.3 510 84.7
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 5.1e-245 850.9 510 84.7
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 1.1e-244 849.7 510 84.7
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.5e-244 849.4 511 83.8
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 84.7
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 3.3e-244 848.2 510 84.5
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 5.6e-244 847.4 510 83.9
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 5.6e-244 847.4 510 84.7
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 5.6e-244 847.4 502 85.7
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 7.3e-244 847.0 511 85.3
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 9.6e-244 846.7 511 84.9
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 1.2e-243 846.3 510 83.9
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 84.1
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 4.7e-243 844.3 549 79.4
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 6.2e-243 844.0 511 83.4
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 83.3
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 83.5
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 83.3
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 83.3
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 6.9e-242 840.5 511 83.8
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.0e-241 839.0 511 83.4
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 2.9e-240 835.1 510 82.7
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 4.9e-240 834.3 494 86.8
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 4.9e-240 834.3 510 82.5
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 3.2e-239 831.6 512 83.8
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 4.2e-239 831.2 522 81.4
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 9.3e-239 830.1 512 83.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 4.6e-238 827.8 472 89.4
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 8.7e-237 823.5 505 83.4
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.1e-236 823.2 511 81.2
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 4.8e-235 817.8 556 78.1
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 5.3e-234 814.3 441 94.1
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.0e-233 812.4 494 83.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 4.9e-232 807.7 486 82.9
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 7.1e-231 803.9 511 80.0
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 1.2e-230 803.1 494 83.4
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.0e-229 800.0 547 76.4
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 9.6e-228 793.5 512 79.9
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.1e-227 792.3 511 77.9
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.5e-225 786.2 509 79.4
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.6e-225 785.4 511 77.3
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 5.5e-223 777.7 510 79.8
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.3e-221 773.1 524 77.3
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.3e-221 773.1 524 77.3
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 8.7e-221 770.4 512 78.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.4e-220 767.3 510 77.8
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 7.6e-209 730.7 511 75.5
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 9.3e-207 723.8 472 80.7
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 2.5e-204 715.7 503 74.2
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 3.8e-200 701.8 413 85.5
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.6e-193 679.1 510 70.2
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 3.9e-189 665.2 514 63.6
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.3e-187 660.2 503 67.4
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 6.1e-182 641.3 375 86.9
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.5e-180 636.7 468 70.3
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 9.4e-175 617.5 514 59.9
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 5.7e-172 608.2 365 85.2
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.2e-169 600.5 379 80.7
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 3.5e-169 599.0 520 60.0
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 4.5e-169 598.6 364 84.1
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 3.0e-165 585.9 511 58.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.2e-165 585.1 494 60.1
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.2e-161 573.9 504 63.9
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.8e-158 562.8 345 85.2
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.0e-157 560.8 325 88.9
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.0e-152 544.3 499 53.7
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 8.9e-149 531.2 307 89.6
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.4e-148 529.3 457 65.2
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.4e-138 496.5 284 89.1
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 1.1e-130 471.1 383 62.4
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 7.3e-119 431.8 254 84.3
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 2.0e-116 423.7 508 46.5
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 8.7e-112 408.3 245 84.9
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.9e-106 390.6 386 55.2
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 2.4e-106 390.2 485 45.2
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 3.5e-105 386.3 267 75.7
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 1.3e-96 357.8 519 38.2
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.7e-78 296.6 199 78.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.6e-71 273.9 343 46.6
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 3.8e-67 260.0 503 37.0
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 5.9e-60 236.1 142 83.8
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.5e-58 230.7 289 47.4
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.7e-57 227.3 363 41.9
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 7.5e-47 192.6 117 77.8
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.6e-44 184.9 206 52.4
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 7.8e-44 182.6 171 64.3
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.5e-42 175.6 197 50.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.8e-33 147.5 106 69.8
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.3e-30 138.7 119 58.0
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 3.7e-30 137.1 82 87.8
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 4.6e-20 103.6 121 56.2
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 5.6e-10 70.1 39 84.6
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 5.6e-10 70.1 63 57.1
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 8.1e-09 66.2 37 83.8
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 2.2e-06 58.2 38 73.7


User provided reference genes

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