Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.1e-108 394.4 200 100.0
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.3e-84 316.6 200 80.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.9e-79 298.9 191 82.7
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.0e-60 237.3 202 58.4
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.2e-60 235.0 202 57.9
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.5e-59 233.4 194 61.3
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 2.2e-58 229.6 200 56.5
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 4.8e-58 228.4 202 55.9
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 7.0e-57 224.6 202 56.9
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.8e-55 218.8 201 55.2
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 2.4e-49 199.5 161 68.3
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.7e-47 193.4 202 48.5
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 6.1e-45 184.9 202 47.5
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 1.4e-44 183.7 202 45.5
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 1.4e-44 183.7 202 45.5
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.8e-44 183.3 199 47.2
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 5.2e-44 181.8 198 47.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 3.4e-43 179.1 202 44.6
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 7.5e-43 177.9 200 46.5
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 9.8e-43 177.6 191 44.5
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 9.8e-43 177.6 202 45.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 4.9e-42 175.3 199 47.7
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.1e-41 174.1 189 46.0
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.4e-41 173.7 202 45.0
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 2.4e-41 172.9 199 45.2
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.2e-40 170.6 191 42.9
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 3.5e-40 169.1 199 43.2
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.5e-40 169.1 202 40.6
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 4.5e-40 168.7 199 43.2
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 7.8e-40 167.9 191 41.9
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-39 167.5 198 42.9
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.0e-39 167.5 199 44.2
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.3e-39 166.4 197 42.6
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 6.6e-39 164.9 198 43.9
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.1e-38 164.1 192 43.2
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.9e-38 163.3 188 45.2
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.5e-38 162.9 198 40.4
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 2.5e-38 162.9 185 42.7
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 2.5e-38 162.9 189 40.7
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 3.3e-38 162.5 186 43.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 4.3e-38 162.2 194 41.2
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.6e-37 160.2 200 43.5
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.8e-37 159.5 198 41.4
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.6e-37 159.1 198 41.4
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.6e-37 159.1 198 41.4
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 4.7e-37 158.7 187 47.6
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.1e-37 158.3 192 40.6
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.0e-36 157.5 200 43.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.0e-36 157.5 202 38.6
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.3e-36 156.4 198 40.4
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 4.0e-36 155.6 186 40.9
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 5.2e-36 155.2 184 41.8
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.2e-35 154.1 202 37.1
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 2.6e-35 152.9 187 40.6
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 7.5e-35 151.4 187 40.1
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 4.9e-34 148.7 187 38.0
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 8.3e-34 147.9 199 40.2
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 2.7e-32 142.9 200 41.0
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.1e-30 137.5 186 39.8
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.5e-30 137.1 189 40.7
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-30 135.2 198 37.9
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 9.5e-30 134.4 189 36.5
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 8.0e-29 131.3 186 37.1
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 8.9e-28 127.9 188 37.8
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.0e-27 126.7 214 35.0
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.8e-27 125.2 194 33.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 1.9e-22 110.2 271 29.9
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 9.5e-22 107.8 108 50.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 3.6e-21 105.9 185 32.4
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 6.2e-21 105.1 190 31.1
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.1e-20 104.4 98 50.0
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 3.4e-19 99.4 192 29.7
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 7.5e-19 98.2 107 48.6
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.7e-18 97.1 143 36.4
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 2.2e-18 96.7 184 31.5
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 3.7e-18 95.9 134 39.6
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 3.7e-18 95.9 134 39.6
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 6.4e-18 95.1 96 52.1
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.4e-18 95.1 186 29.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 8.3e-18 94.7 86 48.8
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.1e-17 94.4 161 36.0
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.4e-17 94.0 90 47.8
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.4e-17 93.2 186 29.6
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 5.4e-17 92.0 107 47.7
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 5.4e-17 92.0 86 46.5
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 7.1e-17 91.7 95 48.4
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 2.1e-16 90.1 95 48.4
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 2.7e-16 89.7 138 37.7
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.0e-15 87.8 106 46.2
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.0e-15 87.8 191 29.3
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 2.3e-15 86.7 57 66.7
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 3.0e-15 86.3 106 46.2
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.0e-15 86.3 107 45.8
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-14 84.3 95 46.3
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 1.9e-14 83.6 107 40.2
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 3.3e-14 82.8 105 44.8
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 7.3e-14 81.6 137 34.3
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 9.5e-14 81.3 88 50.0
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.2e-13 80.9 107 44.9
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.6e-13 80.5 107 40.2
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 1.6e-13 80.5 99 42.4
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.6e-13 80.5 57 57.9
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 2.8e-13 79.7 95 42.1
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.8e-13 79.7 107 40.2
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 4.7e-13 79.0 107 42.1
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.7e-13 79.0 107 43.0
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.4e-12 77.4 99 42.4
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.8e-12 77.0 107 39.3
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 2.4e-12 76.6 66 50.0
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.4e-12 76.6 56 53.6
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 3.1e-12 76.3 90 43.3
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.1e-12 76.3 84 38.1
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.0e-12 75.9 107 43.0
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 6.8e-12 75.1 56 53.6
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 8.9e-12 74.7 62 48.4
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.5e-11 73.9 77 45.5
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.5e-11 73.9 60 51.7
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.0e-11 73.6 107 39.3
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.6e-11 73.2 81 42.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 2.6e-11 73.2 97 40.2
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 4.4e-11 72.4 61 45.9
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 5.8e-11 72.0 52 57.7
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 5.8e-11 72.0 52 57.7
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 7.6e-11 71.6 107 38.3
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 9.9e-11 71.2 81 40.7
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 2.2e-10 70.1 105 37.1
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.2e-10 70.1 107 38.3
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.9e-10 69.7 107 38.3
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 4.9e-10 68.9 99 38.4
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 8.4e-10 68.2 91 28.6
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.4e-09 66.6 99 34.3
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 3.2e-09 66.2 58 50.0
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 4.1e-09 65.9 73 47.9
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 5.4e-09 65.5 73 47.9
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 5.4e-09 65.5 73 47.9
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 7.1e-09 65.1 95 37.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 9.2e-09 64.7 57 56.1
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 1.2e-08 64.3 97 37.1
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.2e-08 64.3 190 21.6
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.6e-08 63.9 110 33.6
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 2.7e-08 63.2 73 46.6
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 3.5e-08 62.8 106 35.8
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 3.5e-08 62.8 148 28.4
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 4.6e-08 62.4 74 47.3
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.8e-08 61.6 110 32.7
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-07 60.5 103 31.1
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 2.3e-07 60.1 65 43.1
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 6.6e-07 58.5 104 33.7
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 6.6e-07 58.5 63 52.4
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.6e-07 58.5 116 32.8
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.5e-06 56.6 115 30.4
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 5.6e-06 55.5 97 36.1
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 9.6e-06 54.7 81 45.7


User provided reference genes

Program Settings