Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 7.2e-248 860.1 437 100.0
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.5e-242 842.4 439 97.9
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-235 819.7 432 95.1
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.3e-233 812.8 430 94.9
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.7e-233 812.4 430 94.7
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 8.5e-233 810.1 430 94.4
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 2.0e-226 788.9 430 92.3
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 5.7e-221 770.8 433 89.6
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 6.3e-220 767.3 472 83.9
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.1e-219 766.5 478 82.2
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.0e-217 760.0 415 91.3
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.4e-214 749.6 477 81.3
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 3.0e-214 748.4 415 89.9
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.3e-208 728.4 440 83.0
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.9e-188 661.4 429 76.0
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 3.2e-187 658.7 433 75.1
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.7e-185 652.9 429 74.6
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.5e-184 649.0 429 74.6
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 7.3e-184 647.5 430 74.9
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.2e-183 646.7 430 73.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.8e-182 642.9 429 73.9
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 2.3e-182 642.5 430 73.5
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 4.0e-182 641.7 430 72.8
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 8.9e-182 640.6 430 74.0
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.2e-181 640.2 429 73.4
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.9e-180 635.6 430 72.1
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.7e-180 635.2 430 71.9
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.7e-180 635.2 431 71.5
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.1e-179 633.6 430 71.9
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.1e-179 633.6 430 72.6
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.1e-179 633.6 430 70.9
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.9e-179 632.9 429 71.6
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.4e-179 631.3 430 71.9
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 7.1e-179 630.9 430 70.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.6e-178 629.8 430 71.4
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.6e-178 629.8 430 72.6
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.5e-178 628.6 430 72.8
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.0e-177 627.1 430 70.7
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.0e-177 625.5 430 70.5
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.1e-176 623.6 430 70.7
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.5e-176 623.2 429 70.9
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.5e-176 623.2 431 70.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 3.3e-176 622.1 430 71.9
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 9.5e-176 620.5 430 70.5
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.2e-175 620.2 432 70.4
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 2.1e-175 619.4 430 70.2
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 8.1e-175 617.5 433 70.2
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 8.1e-175 617.5 458 69.2
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 8.1e-175 617.5 430 69.8
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.8e-174 616.3 431 70.5
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.4e-174 615.9 430 69.5
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 2.6e-173 612.5 433 68.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 7.6e-173 610.9 431 68.9
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.9e-172 609.0 431 69.4
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.8e-172 608.6 429 69.2
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.4e-171 606.7 431 70.1
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.9e-171 606.3 432 69.7
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 7.1e-171 604.4 432 70.4
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-170 603.6 433 68.8
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.6e-170 603.2 430 68.6
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 1.6e-170 603.2 435 69.0
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.1e-170 602.8 430 68.6
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.1e-170 602.8 433 69.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 7.8e-170 600.9 430 68.4
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 2.3e-169 599.4 468 65.4
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 5.1e-169 598.2 430 68.6
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 6.6e-169 597.8 430 68.8
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.9e-168 596.3 429 68.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.5e-168 595.9 431 68.0
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.2e-167 593.6 430 68.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 6.9e-166 587.8 430 67.4
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 3.4e-165 585.5 429 66.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.4e-165 585.1 428 67.8
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 7.1e-163 577.8 434 66.6
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 9.3e-163 577.4 434 67.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 2.3e-161 572.8 510 59.2
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 3.0e-161 572.4 339 87.0
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 3.0e-161 572.4 435 66.4
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.9e-160 569.7 432 65.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.0e-158 562.0 434 63.8
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 4.0e-158 562.0 520 56.3
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 7.6e-157 557.8 430 65.6
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.9e-156 555.8 430 65.3
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.9e-156 555.1 430 65.1
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 3.5e-154 548.9 439 64.2
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 7.9e-154 547.7 341 83.3
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 7.4e-152 541.2 364 73.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 8.1e-151 537.7 448 61.2
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 5.3e-150 535.0 430 63.3
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.2e-147 525.8 435 62.5
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 4.2e-147 525.4 421 62.9
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 7.4e-144 514.6 380 67.1
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.8e-143 512.7 380 66.8
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 6.2e-143 511.5 420 63.3
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.1e-142 510.8 382 68.6
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.4e-142 510.4 379 67.0
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.0e-141 506.5 376 67.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 3.9e-137 492.3 448 59.2
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 5.7e-136 488.4 726 40.8
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 7.4e-136 488.0 362 67.7
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 2.2e-132 476.5 436 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 5.9e-125 451.8 436 52.1
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.7e-124 450.3 438 50.9
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 3.8e-124 449.1 692 40.8
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.1e-118 429.1 316 68.0
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 9.1e-118 427.9 298 71.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 5.5e-115 418.7 437 47.8
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 3.9e-113 412.5 435 49.4
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.5e-108 394.8 283 68.9
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.0e-100 371.3 350 53.1
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 4.7e-90 335.9 221 74.2
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.7e-79 299.7 247 63.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 6.4e-79 298.9 219 68.5
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-65 255.0 231 60.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 9.9e-64 248.4 161 76.4
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 5.4e-62 242.7 430 33.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 2.5e-59 233.8 283 48.1
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 8.1e-58 228.8 215 58.1
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.5e-56 224.6 159 69.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 7.1e-54 215.7 430 36.3
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.7e-52 211.1 134 79.1
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.9e-52 209.9 131 73.3
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.3e-47 194.9 200 57.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.8e-47 193.4 193 58.5
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.5e-43 181.4 142 62.0
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 6.9e-41 172.6 140 61.4
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.7e-36 155.6 149 51.0
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 8.7e-36 155.6 317 32.5
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.0e-25 119.0 120 50.8
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 1.7e-23 114.8 54 94.4
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 8.4e-23 112.5 146 48.6
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-21 108.6 94 57.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 2.8e-18 97.4 54 88.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 9.0e-17 92.4 70 62.9
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.0e-16 91.3 79 54.4
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.0e-15 89.0 70 61.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.2e-15 87.8 70 61.4
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.7e-10 70.5 85 40.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.1e-09 68.9 43 72.1
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 9.1e-09 65.9 42 66.7
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 8.5e-07 59.3 37 73.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.4e-06 58.5 46 54.3


User provided reference genes

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