Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 6.7e-70 267.3 143 100.0
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.5e-69 266.2 143 99.3
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.2e-63 246.5 132 96.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 3.1e-59 231.9 145 89.0
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.5e-58 228.4 143 87.4
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.1e-56 223.4 147 87.1
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 3.0e-54 215.3 149 78.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 4.1e-51 204.9 145 78.6
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 4.1e-51 204.9 145 78.6
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.2e-50 203.4 147 76.9
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.2e-50 203.4 147 76.9
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.7e-49 199.5 143 77.6
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 7.7e-42 174.1 144 66.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.0e-41 173.7 149 64.4
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.3e-36 156.8 145 63.4
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 5.8e-29 131.3 147 54.4
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 9.8e-29 130.6 145 53.1
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.2e-28 129.4 142 54.2
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.9e-28 128.3 142 54.2
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 4.9e-28 128.3 146 54.1
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-27 126.3 144 53.5
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.2e-27 125.6 144 53.5
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.2e-27 125.6 144 53.5
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.1e-27 125.2 142 53.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.1e-27 125.2 147 53.1
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.2e-26 123.6 146 52.7
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.0e-26 122.9 137 56.2
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-25 119.0 145 49.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.6e-25 117.9 146 52.1
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.6e-25 117.9 134 50.7
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.9e-24 116.3 150 50.0
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.9e-24 116.3 132 54.5
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.5e-24 115.9 150 48.7
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.5e-24 115.9 143 49.7
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.2e-23 113.6 139 50.4
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 1.6e-23 113.2 150 48.0
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 2.1e-23 112.8 152 46.1
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 2.1e-23 112.8 135 52.6
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.8e-23 112.5 154 48.7
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.7e-23 111.7 121 55.4
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 4.7e-23 111.7 153 48.4
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 6.2e-23 111.3 147 49.0
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 6.2e-23 111.3 150 48.0
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 8.0e-23 110.9 129 51.2
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-22 110.5 130 53.1
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-22 110.2 131 51.9
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.4e-22 110.2 153 47.7
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.8e-22 109.8 139 46.0
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.8e-22 109.8 139 48.9
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.8e-22 109.8 143 46.2
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.8e-22 109.8 132 50.8
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 4.0e-22 108.6 128 50.0
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.0e-22 108.6 150 43.3
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 6.8e-22 107.8 140 45.0
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 8.9e-22 107.5 132 49.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-21 107.1 134 50.0
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.5e-21 106.7 147 49.7
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.6e-21 105.9 132 47.7
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 2.6e-21 105.9 135 47.4
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 9.8e-21 104.0 131 49.6
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 9.8e-21 104.0 139 47.5
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.3e-20 103.6 145 44.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.3e-20 103.6 145 44.8
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.7e-20 103.2 131 48.1
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.2e-20 102.8 129 50.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.7e-20 102.1 145 44.8
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.9e-20 101.7 140 45.0
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 4.9e-20 101.7 131 49.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 6.4e-20 101.3 131 49.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.4e-20 101.3 137 46.7
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 8.3e-20 100.9 139 48.2
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.4e-19 100.1 141 47.5
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.9e-19 99.8 135 47.4
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.9e-19 99.8 132 50.8
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.9e-19 99.8 132 50.8
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 4.1e-19 98.6 131 48.9
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 7.0e-19 97.8 136 44.9
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.0e-19 97.8 143 46.2
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 7.0e-19 97.8 128 48.4
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 9.2e-19 97.4 136 44.1
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 9.2e-19 97.4 145 48.3
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 9.2e-19 97.4 139 48.2
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.1e-18 96.3 136 47.8
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.1e-18 96.3 143 43.4
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 3.5e-18 95.5 127 44.9
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.6e-18 95.1 104 51.0
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 4.6e-18 95.1 159 41.5
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.0e-18 94.7 130 46.9
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.3e-17 93.6 149 40.3
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.0e-17 92.4 130 44.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.6e-17 91.3 130 45.4
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 6.6e-17 91.3 150 39.3
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 8.6e-17 90.9 129 44.2
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-16 90.5 106 50.9
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.5e-16 89.4 141 45.4
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 4.3e-16 88.6 148 43.2
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 4.3e-16 88.6 133 45.1
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.3e-16 87.8 150 44.0
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 7.3e-16 87.8 144 41.7
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.6e-15 86.7 137 41.6
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 2.8e-15 85.9 144 41.7
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.6e-15 85.5 131 45.8
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.6e-15 85.5 137 46.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 4.7e-15 85.1 151 41.7
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.2e-15 84.7 140 39.3
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.1e-14 84.0 150 42.7
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 6.8e-14 81.3 113 46.9
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.8e-14 81.3 113 46.9
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.2e-13 80.5 113 45.1
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.0e-13 79.7 131 44.3
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 3.4e-13 79.0 101 49.5
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 4.4e-13 78.6 126 41.3
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.5e-13 77.8 117 44.4
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.2e-12 76.3 124 41.9
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.9e-12 75.1 141 41.8
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.1e-10 69.7 135 40.7
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.1e-10 69.7 114 38.6
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-10 69.7 85 49.4
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.7e-10 69.3 105 43.8
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 3.5e-10 68.9 97 41.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-09 66.2 85 48.2
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.0e-09 65.9 85 52.9
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.9e-09 65.5 135 40.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 6.6e-09 64.7 79 46.8
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.6e-09 64.3 77 50.6
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.5e-08 63.5 90 42.2
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.5e-08 63.5 90 42.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 7.3e-08 61.2 101 40.6


User provided reference genes

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