Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 5.4e-150 534.3 261 100.0
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 4.7e-138 494.6 340 75.9
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 9.5e-131 470.3 334 74.6
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 9.5e-131 470.3 334 74.6
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 5.8e-120 434.5 341 66.3
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 1.7e-108 396.4 340 61.5
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 5.1e-108 394.8 350 62.9
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 3.3e-107 392.1 329 62.6
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 5.6e-107 391.3 350 62.6
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 7.3e-107 391.0 350 62.6
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 4.8e-106 388.3 349 62.2
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 4.0e-105 385.2 349 61.6
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 7.9e-101 370.9 206 89.3
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 6.2e-98 361.3 293 64.5
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 1.8e-97 359.8 287 65.5
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 4.5e-96 355.1 313 62.0
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 6.9e-89 331.3 322 52.8
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 1.2e-88 330.5 322 52.8
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 1.2e-88 330.5 322 52.8
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 4.5e-88 328.6 319 54.5
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 7.6e-88 327.8 325 53.5
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 7.6e-88 327.8 332 53.0
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 1.3e-87 327.0 346 52.6
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 1.7e-87 326.6 343 51.0
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 2.9e-87 325.9 331 52.0
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 1.4e-86 323.6 324 52.2
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 1.9e-86 323.2 328 53.4
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 9.3e-86 320.9 328 52.4
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 6.1e-85 318.2 309 53.7
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 2.3e-84 316.2 336 51.2
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 3.0e-84 315.8 336 51.2
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 5.1e-84 315.1 333 51.4
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 8.7e-84 314.3 327 51.1
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 1.5e-83 313.5 334 52.1
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 9.7e-83 310.8 325 51.7
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 1.6e-82 310.1 333 51.4
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 4.8e-82 308.5 347 48.7
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 6.3e-82 308.1 331 50.2
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 1.4e-81 307.0 330 51.8
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 1.4e-81 307.0 325 50.8
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 1.4e-81 307.0 336 50.6
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 1.4e-81 307.0 319 52.0
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 5.3e-81 305.1 340 50.3
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 1.2e-80 303.9 347 48.1
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 3.4e-80 302.4 336 51.2
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 7.7e-80 301.2 331 48.9
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 1.3e-79 300.4 311 53.1
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 1.7e-79 300.1 326 48.8
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 2.2e-79 299.7 332 49.7
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 5.0e-79 298.5 326 48.5
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 5.0e-79 298.5 314 50.3
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 5.0e-79 298.5 307 52.1
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 8.5e-79 297.7 333 49.8
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 8.5e-79 297.7 311 48.9
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 1.1e-78 297.4 341 49.0
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 4.2e-78 295.4 320 48.8
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 7.2e-78 294.7 336 47.3
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 7.2e-78 294.7 336 47.3
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 9.4e-78 294.3 301 51.5
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 1.2e-77 293.9 341 48.7
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 2.7e-77 292.7 300 51.7
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 3.6e-77 292.4 323 48.0
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 4.6e-77 292.0 316 49.7
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 7.9e-77 291.2 323 50.5
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 1.0e-76 290.8 320 49.4
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 1.4e-76 290.4 326 49.1
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 2.3e-76 289.7 320 48.4
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 6.7e-76 288.1 322 49.7
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 6.7e-76 288.1 318 49.4
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 1.1e-75 287.3 344 45.9
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 1.5e-75 287.0 338 47.3
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 2.2e-74 283.1 335 48.4
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 3.7e-74 282.3 326 46.0
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 9.1e-73 277.7 275 54.2
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 1.2e-72 277.3 219 66.7
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.5e-72 276.9 323 48.0
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 3.4e-72 275.8 210 64.8
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 4.5e-72 275.4 234 61.1
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 1.0e-71 274.2 307 46.6
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 2.2e-71 273.1 196 66.8
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 1.8e-68 263.5 300 49.0
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 5.1e-68 261.9 337 45.1
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 6.7e-68 261.5 310 46.1
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 3.3e-67 259.2 331 46.8
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 4.4e-67 258.8 204 63.2
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.6e-64 249.6 296 52.0
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 3.6e-61 239.2 122 97.5
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 8.8e-60 234.6 362 40.6
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 1.1e-59 234.2 197 58.9
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 3.2e-54 216.1 210 56.2
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 8.0e-53 211.5 301 41.5
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 2.0e-51 206.8 293 37.5
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 3.7e-50 202.6 317 40.4
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 4.8e-50 202.2 299 38.1
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 5.0e-47 192.2 233 46.4
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 6.8e-44 181.8 187 50.3
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 2.7e-40 169.9 297 34.3
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.9e-39 166.4 139 58.3
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 7.3e-38 161.8 355 30.4
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 4.7e-37 159.1 313 35.8
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 5.0e-31 139.0 259 33.6
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 7.3e-30 135.2 160 45.0
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 3.6e-29 132.9 102 62.7
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 1.3e-23 114.4 99 56.6
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 1.7e-23 114.0 241 33.6
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 3.4e-19 99.8 143 37.8
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 2.9e-18 96.7 142 40.1
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 1.7e-15 87.4 80 58.8
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 3.0e-15 86.7 54 70.4
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 1.9e-14 84.0 48 77.1
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 8.1e-13 78.6 48 70.8
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 1.1e-12 78.2 60 60.0
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 4.0e-12 76.3 174 35.6
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 5.1e-07 59.3 30 80.0
Mapoly0025s0077 Marchantia polymorpha HOM05D000224 ORTHO05D001489 5.1e-07 59.3 105 33.3
Potri.017G115350 Populus trichocarpa HOM05D006950 ORTHO05D008798 1.5e-06 57.8 53 54.7
PGR102G1923 Punica granatum HOM05D000224 ORTHO05D000337 5.6e-06 55.8 154 29.2
DCAR_024125 Daucus carota HOM05D000224 ORTHO05D001489 7.3e-06 55.5 139 28.8
Glyma.08G247700 Glycine max HOM05D000224 ORTHO05D001489 7.3e-06 55.5 101 27.7


User provided reference genes

Program Settings