Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL61U10010 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 6.2e-91 337.4 168 100.0
Carub.0008s0609 Capsella rubella HOM05D003425 ORTHO05D003897 1.4e-82 309.7 166 93.4
AT5G42810 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 6.9e-82 307.4 166 93.4
Sp2g07500 Schrenkiella parvula HOM05D003425 ORTHO05D003897 1.3e-77 293.1 166 87.3
Thhalv10003206m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 8.7e-77 290.4 170 86.5
BraA09t37609Z Brassica rapa HOM05D003425 ORTHO05D003897 1.4e-74 283.1 166 85.5
A09p20000 Brassica napus HOM05D003425 ORTHO05D003897 5.3e-74 281.2 166 84.9
Aa31LG9G12880 Aethionema arabicum HOM05D003425 ORTHO05D003897 1.5e-73 279.6 166 85.5
C09p25370 Brassica napus HOM05D003425 ORTHO05D003897 1.5e-73 279.6 167 84.4
BcaC04g21968 Brassica carinata HOM05D003425 ORTHO05D003897 2.6e-73 278.9 167 84.4
BolC9t55437H Brassica oleracea HOM05D003425 ORTHO05D003897 3.4e-73 278.5 167 83.8
BcaB07g31042 Brassica carinata HOM05D003425 ORTHO05D003897 2.9e-72 275.4 169 81.7
THA.LOC104814145 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 8.4e-72 273.9 166 81.9
AL8G18220 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 1.2e-70 270.0 134 100.0
Duzib093G1530 Durio zibethinus HOM05D003425 ORTHO05D003897 6.5e-56 221.1 166 63.9
Thecc.08G031800 Theobroma cacao HOM05D003425 ORTHO05D003897 1.9e-55 219.5 166 62.7
COL.COLO4_26258 Corchorus olitorius HOM05D003425 ORTHO05D003897 2.7e-54 215.7 166 60.8
Cpa.g.sc104.107 Carica papaya HOM05D003425 ORTHO05D003897 3.6e-54 215.3 166 65.7
Atru.chr13.426 Acer truncatum HOM05D003425 ORTHO05D003897 1.0e-53 213.8 169 62.7
Duzib041G0299 Durio zibethinus HOM05D003425 ORTHO05D003897 2.3e-53 212.6 166 60.2
Manes.05G156100 Manihot esculenta HOM05D003425 ORTHO05D003897 3.9e-53 211.8 166 61.4
Gohir.A05G191900 Gossypium hirsutum HOM05D003425 ORTHO05D003897 5.1e-53 211.5 166 61.4
Gohir.D05G195200 Gossypium hirsutum HOM05D003425 ORTHO05D003897 5.1e-53 211.5 166 61.4
Gorai.009G200000 Gossypium raimondii HOM05D003425 ORTHO05D003897 5.1e-53 211.5 166 61.4
Manes.18G020000 Manihot esculenta HOM05D003425 ORTHO05D003897 2.5e-52 209.1 164 64.0
Cpa.g.sc99.35 Carica papaya HOM05D003425 ORTHO05D003897 2.2e-51 206.1 166 61.4
Hma1.2p1_0775F.1_g216480 Hydrangea macrophylla HOM05D003425 ORTHO05D003897 1.4e-50 203.4 166 60.2
Actinidia22523 Actinidia chinensis HOM05D003425 ORTHO05D003897 1.8e-50 203.0 168 59.5
Potri.005G230200 Populus trichocarpa HOM05D003425 ORTHO05D003897 3.1e-50 202.2 164 59.8
TWI56G1347 Tripterygium wilfordii HOM05D003425 ORTHO05D003897 6.9e-50 201.1 172 59.3
Gohir.D06G003800 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.5e-49 199.9 166 57.2
Gohir.A06G008100 Gossypium hirsutum HOM05D003425 ORTHO05D003897 2.0e-49 199.5 166 57.2
Eucgr.F01873 Eucalyptus grandis HOM05D003425 ORTHO05D003897 2.6e-49 199.1 166 57.2
Gorai.010G008400 Gossypium raimondii HOM05D003425 ORTHO05D003897 2.6e-49 199.1 166 57.2
Rhsim06G0029700 Rhododendron simsii HOM05D003425 ORTHO05D003897 2.6e-49 199.1 169 60.9
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 1.7e-48 196.4 168 58.9
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 1.4e-47 193.4 168 60.7
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 1.9e-47 193.0 166 59.6
Lj4A789T47 Lonicera japonica HOM05D003425 ORTHO05D003897 1.9e-47 193.0 166 57.8
Potri.002G032900 Populus trichocarpa HOM05D003425 ORTHO05D003897 1.9e-47 193.0 164 56.7
CSS0009417 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 2.5e-47 192.6 168 58.9
Cfa013863 Carpinus fangiana HOM05D003425 ORTHO05D003897 2.5e-47 192.6 166 59.6
TAR625G0421 Trochodendron aralioides HOM05D003425 ORTHO05D003897 2.5e-47 192.6 166 57.2
CiPaw.07G158500 Carya illinoinensis HOM05D003425 ORTHO05D003897 4.2e-47 191.8 166 57.8
Lalb_Chr22g0354631 Lupinus albus HOM05D003425 ORTHO05D003897 4.2e-47 191.8 166 56.0
Ciclev10001170m.g Citrus clementina HOM05D003425 ORTHO05D003897 5.5e-47 191.4 169 56.8
Aqoxy6G01168 Aquilegia oxysepala HOM05D003425 ORTHO05D003897 2.1e-46 189.5 167 57.5
Phvul.009G060100 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 2.7e-46 189.1 166 56.6
Lsat_1_v5_gn_6_69620 Lactuca sativa HOM05D003425 ORTHO05D003897 7.9e-46 187.6 166 54.8
Glyma.04G030000 Glycine max HOM05D003425 ORTHO05D003897 1.4e-45 186.8 166 56.0
THA.LOC104813817 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 1.8e-45 186.4 166 56.6
Glyma.06G030100 Glycine max HOM05D003425 ORTHO05D003897 2.3e-45 186.0 166 55.4
Lj1g0002363 Lotus japonicus HOM05D003425 ORTHO05D003897 3.0e-45 185.7 166 56.0
VMungo1309G3095 Vigna mungo HOM05D003425 ORTHO05D003897 3.0e-45 185.7 166 55.4
Psat5g016160 Pisum sativum HOM05D003425 ORTHO05D003897 3.9e-45 185.3 166 54.8
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 5.1e-45 184.9 177 53.7
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 1.1e-44 183.7 152 59.2
Hund17177 Selenicereus undatus HOM05D003425 ORTHO05D003897 1.1e-44 183.7 166 54.8
CARHR022450 Cardamine hirsuta HOM05D003425 ORTHO05D003897 1.5e-44 183.3 168 54.2
Lalb_Chr23g0266531 Lupinus albus HOM05D003425 ORTHO05D003897 1.5e-44 183.3 166 54.8
FAN20G1443 Fragaria x ananassa HOM05D003425 ORTHO05D003897 2.0e-44 183.0 167 56.3
Prupe.1G549800 Prunus persica HOM05D003425 ORTHO05D003897 2.0e-44 183.0 166 52.4
arahy.Tifrunner.gnm1.ann1.2UC4WV Arachis hypogaea HOM05D003425 ORTHO05D003897 2.6e-44 182.6 166 53.0
Prupe.1G375600 Prunus persica HOM05D003425 ORTHO05D003897 2.6e-44 182.6 166 53.0
MD08G1026900 Malus domestica HOM05D003425 ORTHO05D003897 3.3e-44 182.2 166 55.4
MBI10_g00770_MAGBIO Magnolia biondii HOM05D003425 ORTHO05D003897 4.4e-44 181.8 166 54.2
RcHm_v2.0_Chr6g0301531 Rosa chinensis HOM05D003425 ORTHO05D003897 4.4e-44 181.8 166 53.6
MELO3C003802.2 Cucumis melo HOM05D003425 ORTHO05D003897 5.7e-44 181.4 167 55.1
ECA233G5099 Erigeron canadensis HOM05D003425 ORTHO05D003897 5.7e-44 181.4 166 53.0
Glyma.14G072200 Glycine max HOM05D003425 ORTHO05D003897 5.7e-44 181.4 167 53.9
Phvul.001G012200 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 5.7e-44 181.4 169 53.3
Carub.0002s0599 Capsella rubella HOM05D003425 ORTHO05D003897 7.4e-44 181.0 167 55.1
AL1G35540 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 2.2e-43 179.5 168 53.6
FAN27G0002 Fragaria x ananassa HOM05D003425 ORTHO05D003897 2.2e-43 179.5 167 55.7
TPR.G12467 Trifolium pratense HOM05D003425 ORTHO05D003897 2.2e-43 179.5 166 56.6
AUR62014493 Chenopodium quinoa HOM05D003425 ORTHO05D003897 2.8e-43 179.1 166 54.2
FvH4_2g39440 Fragaria vesca HOM05D003425 ORTHO05D003897 2.8e-43 179.1 167 55.1
MD15G1023500 Malus domestica HOM05D003425 ORTHO05D003897 3.7e-43 178.7 166 54.2
Sp1g19600 Schrenkiella parvula HOM05D003425 ORTHO05D003897 3.7e-43 178.7 166 54.8
Sed0012207 Sechium edule HOM05D003425 ORTHO05D003897 3.7e-43 178.7 166 53.6
HanXRQChr05g0151701 Helianthus annuus HOM05D003425 ORTHO05D003897 4.8e-43 178.3 166 53.0
Rhsim07G0021400 Rhododendron simsii HOM05D003425 ORTHO05D003897 4.8e-43 178.3 155 58.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 8.2e-43 177.6 167 54.5
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 8.2e-43 177.6 167 54.5
Thhalv10007647m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 8.2e-43 177.6 164 53.7
Sc26g0003500 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.1e-42 177.2 165 53.9
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.4e-42 176.8 167 54.5
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.4e-42 176.8 167 54.5
Carub.0001s2165 Capsella rubella HOM05D003425 ORTHO05D003897 1.8e-42 176.4 168 53.0
CANSAT80G1124 Cannabis sativa HOM05D003425 ORTHO05D003897 4.1e-42 175.3 166 51.2
AT1G22100 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 7.0e-42 174.5 168 52.4
CsaV3_3G045400 Cucumis sativus L. HOM05D003425 ORTHO05D003897 7.0e-42 174.5 167 53.9
Nn5g29685 Nelumbo nucifera HOM05D003425 ORTHO05D003897 7.0e-42 174.5 205 47.8
ECA246G1007 Erigeron canadensis HOM05D003425 ORTHO05D003897 9.1e-42 174.1 164 51.8
CsaV3_2G028930 Cucumis sativus L. HOM05D003425 ORTHO05D003897 2.0e-41 172.9 165 52.7
Lj2A96T68 Lonicera japonica HOM05D003425 ORTHO05D003897 2.0e-41 172.9 160 53.8
BolC8t49775H Brassica oleracea HOM05D003425 ORTHO05D003897 2.6e-41 172.6 167 53.9
GSVIVG01009755001 Vitis vinifera HOM05D003425 ORTHO05D003897 2.6e-41 172.6 182 48.9
Cc10_g02550 Coffea canephora HOM05D003425 ORTHO05D003897 3.5e-41 172.2 166 54.2
MELO3C010962.2 Cucumis melo HOM05D003425 ORTHO05D003897 4.5e-41 171.8 165 53.3
Lj5g0018838 Lotus japonicus HOM05D003425 ORTHO05D003897 4.5e-41 171.8 167 51.5
arahy.Tifrunner.gnm1.ann1.2NS234 Arachis hypogaea HOM05D003425 ORTHO05D003897 5.9e-41 171.4 162 51.2
Nitab4.5_0003682g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 7.7e-41 171.0 166 50.6
Migut.C00755 Erythranthe guttata HOM05D003425 ORTHO05D003897 1.0e-40 170.6 167 52.1
PGSC0003DMG400003698 Solanum tuberosum HOM05D003425 ORTHO05D003897 1.0e-40 170.6 166 52.4
Oeu063611.1 Olea europaea HOM05D003425 ORTHO05D003897 1.3e-40 170.2 168 55.4
QL02p009389 Quercus lobata HOM05D003425 ORTHO05D003897 1.3e-40 170.2 150 54.7
ClCG08G014810 Citrullus lanatus HOM05D003425 ORTHO05D003897 2.2e-40 169.5 165 52.1
Medtr3g112130 Medicago truncatula HOM05D003425 ORTHO05D003897 2.2e-40 169.5 166 52.4
HanXRQChr08g0236251 Helianthus annuus HOM05D003425 ORTHO05D003897 2.9e-40 169.1 169 49.7
arahy.Tifrunner.gnm1.ann1.P3QKDQ Arachis hypogaea HOM05D003425 ORTHO05D003897 3.8e-40 168.7 166 50.0
Sed0018986 Sechium edule HOM05D003425 ORTHO05D003897 5.0e-40 168.3 167 52.1
arahy.Tifrunner.gnm1.ann1.X2SRZK Arachis hypogaea HOM05D003425 ORTHO05D003897 6.5e-40 167.9 166 50.0
SEGI_18330 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 6.5e-40 167.9 163 49.1
Solyc04g080670.3 Solanum lycopersicum HOM05D003425 ORTHO05D003897 6.5e-40 167.9 166 51.2
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 8.5e-40 167.5 156 54.5
Sopen04g034260 Solanum pennellii HOM05D003425 ORTHO05D003897 8.5e-40 167.5 166 51.8
SalBow2G1759 Salvia bowleyana HOM05D003425 ORTHO05D003897 1.1e-39 167.2 167 51.5
CAN.G710.1 Capsicum annuum HOM05D003425 ORTHO05D003897 1.5e-39 166.8 166 51.8
Medtr1g022475 Medicago truncatula HOM05D003425 ORTHO05D003897 1.5e-39 166.8 166 49.4
TPR.G14394 Trifolium pratense HOM05D003425 ORTHO05D003897 1.5e-39 166.8 166 50.6
CDE02G1177 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 1.9e-39 166.4 166 51.2
AL2G17640 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 3.2e-39 165.6 169 52.7
Lsat_1_v5_gn_5_3401 Lactuca sativa HOM05D003425 ORTHO05D003897 3.2e-39 165.6 164 51.8
DCAR_017527 Daucus carota HOM05D003425 ORTHO05D003897 4.2e-39 165.2 167 55.1
PSO675G3885 Papaver somniferum HOM05D003425 ORTHO05D003897 5.5e-39 164.9 166 50.0
SalBow7G0662 Salvia bowleyana HOM05D003425 ORTHO05D003897 5.5e-39 164.9 167 53.3
SGA_v2.0_scaffold201G41381 Striga asiatica HOM05D003425 ORTHO05D003897 7.2e-39 164.5 168 53.0
DCAR_009967 Daucus carota HOM05D003425 ORTHO05D003897 9.4e-39 164.1 166 50.6
Migut.C00703 Erythranthe guttata HOM05D003425 ORTHO05D003897 2.1e-38 162.9 167 50.9
Nitab4.5_0005911g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 2.7e-38 162.5 166 49.4
AT1G58643 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 3.6e-38 162.2 167 50.3
AT1G58936 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 3.6e-38 162.2 167 50.3
AT1G59312 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 3.6e-38 162.2 167 50.3
CDE06G1246 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 4.7e-38 161.8 166 48.8
PSO541G3967 Papaver somniferum HOM05D003425 ORTHO05D003897 8.0e-38 161.0 166 49.4
Psat6g200440 Pisum sativum HOM05D003425 ORTHO05D003897 1.0e-37 160.6 152 49.3
Aa31LG7G6080 Aethionema arabicum HOM05D003425 ORTHO05D003897 4.0e-37 158.7 171 48.0
Ah.05g176930 Amaranthus hybridus HOM05D003425 ORTHO05D003897 4.0e-37 158.7 167 49.7
ClCG05G018770 Citrullus lanatus HOM05D003425 ORTHO05D003897 2.6e-36 156.0 171 50.9
Zm00001eb067500 Zea mays HOM05D003425 ORTHO05D003897 7.5e-36 154.5 165 49.1
Zm00001eb432760 Zea mays HOM05D003425 ORTHO05D003897 1.7e-35 153.3 165 48.5
VMungo0647G2373 Vigna mungo HOM05D003425 ORTHO05D003897 6.3e-35 151.4 153 50.3
AUR62044165 Chenopodium quinoa HOM05D003425 ORTHO05D003897 8.2e-35 151.0 169 47.3
Ca_15494_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 1.4e-34 150.2 154 51.3
Os04g0661200 Oryza sativa ssp. japonica HOM05D003425 ORTHO05D003897 2.0e-33 146.4 166 47.6
Psat7g245960 Pisum sativum HOM05D003425 ORTHO05D003897 1.5e-31 140.2 141 48.2
PGSC0003DMG400015950 Solanum tuberosum HOM05D003425 ORTHO05D003897 1.9e-31 139.8 144 47.2
HPP92_003107 Vanilla planifolia HOM05D003425 ORTHO05D003897 4.2e-31 138.7 168 44.0
ATR0568G131 Amborella trichopoda HOM05D003425 ORTHO05D003897 8.0e-30 134.4 134 50.0
EL10Ac1g00639 Beta vulgaris HOM05D003425 ORTHO05D003897 8.0e-30 134.4 134 50.7
PGR031G1797 Punica granatum HOM05D003425 ORTHO05D003897 1.2e-28 130.6 135 45.9
Peaxi162Scf00028g00119 Petunia axillaris HOM05D003425 ORTHO05D003897 7.5e-28 127.9 134 47.0
C07p21730 Brassica napus HOM05D003425 ORTHO05D003897 1.8e-26 123.2 168 42.9
BolC7t42703H Brassica oleracea HOM05D003425 ORTHO05D003897 1.8e-26 123.2 168 42.9
Pp3c1_36100 Physcomitrium patens HOM05D003425 ORTHO05D003897 1.8e-26 123.2 176 42.6
Oeu047510.1 Olea europaea HOM05D003425 ORTHO05D003897 7.0e-26 121.3 119 51.3
Mapoly0027s0125 Marchantia polymorpha HOM05D003425 ORTHO05D003897 2.0e-25 119.8 167 37.7
Ca_18048_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 3.5e-25 119.0 130 47.7
Mapoly0027s0188 Marchantia polymorpha HOM05D003425 ORTHO05D003897 5.9e-25 118.2 164 37.8
Pp3c14_17850 Physcomitrium patens HOM05D003425 ORTHO05D003897 7.7e-25 117.9 171 39.2
SMO200G0117 Selaginella moellendorffii HOM05D003425 ORTHO05D003897 2.1e-22 109.8 163 40.5
Peaxi162Scf00140g00065 Petunia axillaris HOM05D003425 ORTHO05D003897 3.6e-22 109.0 165 41.2
Oeu030423.1 Olea europaea HOM05D003425 ORTHO05D003897 3.0e-21 105.9 112 48.2
Psat6g009400 Pisum sativum HOM05D003425 ORTHO05D003897 5.2e-21 105.1 136 43.4
AUR62038045 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.7e-19 100.1 136 41.2
QL07p047083 Quercus lobata HOM05D003425 ORTHO05D003897 2.2e-19 99.8 178 36.0
Sed0022647 Sechium edule HOM05D003425 ORTHO05D003897 3.8e-16 89.0 89 51.7
SHI08133 Sapria himalayana HOM05D003425 ORTHO05D003897 9.5e-15 84.3 108 43.5
Lsat_1_v5_gn_0_45760 Lactuca sativa HOM05D003425 ORTHO05D003897 3.0e-13 79.3 74 55.4
MCO01G607 Micromonas commoda HOM05D003425 ORTHO05D003897 5.2e-13 78.6 166 33.1
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 6.8e-13 78.2 63 58.7
CAN.G67.10 Capsicum annuum HOM05D003425 ORTHO05D003897 1.1e-10 70.9 89 40.4
CBR_g22893 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-10 70.9 153 32.0
QL02p009285 Quercus lobata HOM05D003425 ORTHO05D003897 1.7e-08 63.5 47 61.7


User provided reference genes

Program Settings