Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 3.4e-107 391.7 205 100.0
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 7.1e-105 384.0 205 98.0
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 4.3e-102 374.8 205 94.1
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 5.4e-97 357.8 205 92.7
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 1.5e-86 323.2 212 82.1
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 5.6e-86 321.2 206 85.0
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 4.2e-81 305.1 215 76.7
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 2.2e-74 282.7 255 65.1
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 2.9e-74 282.3 208 76.4
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 1.8e-68 263.1 211 70.6
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.4e-67 258.8 214 69.2
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 1.4e-65 253.4 261 60.9
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 1.1e-62 243.8 303 52.8
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 3.7e-61 238.8 265 56.2
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 6.9e-60 234.6 212 64.2
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 1.4e-57 226.9 196 65.8
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 3.6e-40 169.1 209 53.1
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 1.3e-37 160.6 205 51.7
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 2.2e-37 159.8 199 50.8
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 4.8e-37 158.7 206 49.5
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 4.8e-37 158.7 205 52.7
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 8.2e-37 157.9 207 53.6
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 5.3e-36 155.2 207 53.1
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 5.3e-36 155.2 203 51.2
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 7.0e-36 154.8 207 53.1
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 4.5e-35 152.1 204 51.0
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 4.7e-32 142.1 199 45.7
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 4.0e-31 139.0 206 49.0
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 8.2e-29 131.3 203 46.3
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 1.1e-28 131.0 212 44.8
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 1.4e-28 130.6 207 45.9
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 1.6e-27 127.1 206 44.7
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 2.7e-27 126.3 206 43.7
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 3.5e-27 125.9 211 43.1
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 3.5e-27 125.9 213 43.7
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 7.7e-27 124.8 202 44.6
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 7.7e-27 124.8 197 45.2
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 1.3e-26 124.0 207 44.4
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 6.5e-26 121.7 204 46.1
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 1.9e-25 120.2 202 46.0
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 5.5e-25 118.6 214 44.4
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 7.2e-25 118.2 212 43.4
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 7.2e-25 118.2 213 42.3
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 9.4e-25 117.9 207 45.4
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 1.2e-24 117.5 212 42.9
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 4.7e-24 115.5 195 41.5
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 1.4e-23 114.0 201 41.3
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.4e-23 114.0 201 41.3
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.4e-23 114.0 201 41.3
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 1.4e-23 114.0 198 42.9
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 1.8e-23 113.6 199 43.7
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.3e-23 113.2 197 44.7
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.0e-23 112.5 192 41.1
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 6.8e-23 111.7 220 40.5
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 8.8e-23 111.3 202 44.6
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 1.2e-22 110.9 202 43.1
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 2.6e-22 109.8 202 44.1
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 4.4e-22 109.0 204 41.7
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 5.7e-22 108.6 216 40.7
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.3e-21 107.5 192 41.1
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.3e-21 107.5 192 41.1
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 2.2e-21 106.7 204 41.7
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 2.2e-21 106.7 211 37.4
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 6.3e-21 105.1 205 39.0
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 6.3e-21 105.1 197 41.1
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 8.3e-21 104.8 197 42.6
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 1.4e-20 104.0 215 39.1
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 3.1e-20 102.8 212 42.0
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 9.1e-20 101.3 221 38.5
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 1.2e-19 100.9 206 41.3
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 1.2e-19 100.9 205 40.0
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 1.2e-19 100.9 209 43.5
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 1.2e-19 100.9 215 41.4
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.6e-19 100.5 196 39.8
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 2.7e-19 99.8 206 37.9
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 2.7e-19 99.8 237 39.7
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 5.9e-19 98.6 205 34.1
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 1.0e-18 97.8 240 39.6
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.7e-18 97.1 197 40.6
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 2.3e-18 96.7 206 40.8
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 6.5e-18 95.1 205 37.1
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 8.6e-18 94.7 190 40.0
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 1.1e-17 94.4 223 35.4
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 4.2e-17 92.4 206 37.4
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 3.6e-16 89.4 196 39.3
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.4e-15 87.4 209 34.4
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.3e-15 86.7 188 37.8
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 4.0e-15 85.9 198 40.4
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 4.0e-15 85.9 222 36.5
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 4.4e-14 82.4 87 51.7
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 4.4e-14 82.4 87 51.7
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 5.7e-14 82.0 87 51.7
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 5.7e-14 82.0 78 57.7
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 7.5e-14 81.6 87 51.7
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 4.9e-13 79.0 171 41.5
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 5.4e-12 75.5 193 33.2
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 2.3e-10 70.1 43 74.4
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 3.8e-10 69.3 213 36.6
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 1.9e-09 67.0 189 32.8
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.3e-09 66.2 198 33.8
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 9.5e-09 64.7 196 28.1
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 2.8e-08 63.2 114 43.0
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 6.1e-08 62.0 198 32.3
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 2.3e-07 60.1 193 32.6
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 8.9e-07 58.2 133 38.3


User provided reference genes

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