Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.3e-229 798.5 398 100.0
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.6e-204 715.3 398 90.5
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.0e-184 648.7 395 81.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 6.1e-161 571.2 391 74.9
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.9e-160 568.5 319 90.3
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 3.3e-159 565.5 392 75.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.4e-157 560.1 322 88.2
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.3e-150 537.0 319 86.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.4e-149 532.7 402 70.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.4e-136 490.3 411 64.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.3e-135 485.7 320 78.1
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 7.0e-133 478.0 320 77.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.2e-132 477.2 402 62.7
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.5e-132 475.3 405 59.8
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 4.5e-132 475.3 416 62.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.8e-131 472.2 313 79.9
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.8e-126 456.1 304 72.7
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-125 453.4 320 75.9
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 4.1e-125 452.2 411 59.6
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 5.9e-124 448.4 448 56.9
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.2e-123 446.4 408 60.0
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.2e-123 446.4 408 60.0
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 8.5e-123 444.5 408 59.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 9.8e-119 431.0 330 69.7
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 3.7e-118 429.1 407 59.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 4.8e-118 428.7 427 57.4
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 9.1e-117 424.5 407 58.2
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 2.0e-116 423.3 330 69.7
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.7e-116 422.9 330 68.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.7e-116 421.4 330 68.8
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 7.7e-116 421.4 326 67.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.3e-115 420.6 332 67.8
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.9e-115 419.5 328 67.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.0e-115 418.7 330 68.5
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.1e-114 417.5 331 68.0
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.5e-114 416.4 325 67.7
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 3.6e-113 412.5 328 68.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.6e-113 412.5 329 67.2
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 6.1e-113 411.8 332 67.5
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 8.0e-113 411.4 330 67.0
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.8e-112 410.2 335 66.6
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.8e-112 410.2 351 63.8
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 3.0e-112 409.5 332 67.2
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 3.0e-112 409.5 328 67.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 4.0e-112 409.1 331 67.4
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 4.0e-112 409.1 332 66.0
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 6.8e-112 408.3 332 65.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 8.9e-112 407.9 326 66.6
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 3.4e-111 406.0 325 66.5
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 3.4e-111 406.0 323 67.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 7.5e-111 404.8 328 67.4
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.8e-110 402.9 325 67.1
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.8e-110 402.9 328 65.2
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.8e-110 402.9 335 65.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 4.9e-110 402.1 328 67.1
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 6.3e-110 401.7 333 65.8
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.1e-109 401.0 329 63.5
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.4e-109 400.6 341 62.5
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.8e-109 400.2 354 59.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.2e-109 399.4 328 63.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 7.0e-109 398.3 319 65.8
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 7.0e-109 398.3 335 61.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-108 397.1 331 65.9
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.6e-108 397.1 334 63.5
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.0e-108 396.7 332 64.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.8e-108 394.8 321 65.1
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 7.8e-108 394.8 330 62.7
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.0e-107 394.4 318 66.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.3e-107 394.0 319 66.8
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 8.6e-107 391.3 327 65.7
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.5e-106 389.8 319 65.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.3e-106 389.4 319 65.2
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.3e-106 389.4 320 65.3
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.1e-105 386.7 318 65.7
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 6.1e-105 385.2 318 64.5
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.0e-104 384.4 319 62.4
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.0e-104 384.4 386 56.2
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.8e-104 383.6 326 60.7
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 2.3e-104 383.3 324 64.2
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.3e-104 383.3 320 61.6
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.0e-104 382.5 334 62.0
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 6.8e-104 381.7 319 65.2
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 6.8e-104 381.7 333 61.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 8.9e-104 381.3 330 63.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.2e-103 380.9 318 64.5
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.5e-103 380.6 323 64.4
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.4e-103 379.4 331 59.8
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.7e-102 377.1 332 59.9
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.2e-102 376.7 321 62.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.2e-102 376.7 333 60.1
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.9e-102 376.3 330 62.1
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.9e-102 376.3 328 62.8
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 3.7e-102 375.9 331 63.1
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.7e-102 375.9 335 60.3
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 6.4e-102 375.2 321 61.1
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.4e-101 374.0 321 61.4
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 3.5e-100 369.4 322 57.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.6e-100 369.0 342 57.9
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.0e-99 367.9 320 61.9
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-99 367.1 320 62.2
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.9e-99 365.9 320 62.8
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.6e-99 364.8 319 59.9
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.1e-98 364.4 319 61.4
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.9e-98 363.6 322 61.8
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 2.5e-98 363.2 317 61.8
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.3e-98 362.8 320 61.2
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 2.1e-97 360.1 316 60.1
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 3.6e-97 359.4 317 61.2
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 3.6e-97 359.4 317 61.2
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 3.6e-97 359.4 317 61.2
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 6.2e-97 358.6 432 47.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 8.1e-97 358.2 301 66.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.4e-96 357.5 316 61.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 5.2e-96 355.5 319 54.9
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 3.4e-95 352.8 395 49.4
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 7.5e-95 351.7 319 58.9
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 3.7e-94 349.4 300 64.7
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.1e-93 345.9 319 63.3
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 5.4e-93 345.5 323 54.8
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 5.1e-91 339.0 326 56.4
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.6e-91 338.2 298 63.8
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.5e-90 337.4 388 52.6
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 9.5e-90 334.7 212 72.6
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.2e-89 334.3 278 59.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.1e-89 333.6 387 51.4
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-88 330.5 253 61.7
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.0e-88 329.3 331 52.3
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.5e-87 327.4 387 51.2
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 7.6e-87 325.1 291 60.5
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.9e-86 322.4 426 46.5
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.4e-86 322.0 369 52.3
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 6.4e-86 322.0 222 66.2
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 2.4e-85 320.1 384 50.5
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.2e-84 317.8 401 49.1
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.5e-84 316.2 437 46.7
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 3.5e-84 316.2 367 51.2
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 3.5e-84 316.2 393 50.1
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.3e-83 314.3 385 50.1
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.3e-83 314.3 388 49.7
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-82 311.2 315 57.8
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.9e-82 310.5 314 47.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.2e-81 307.8 325 47.1
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.6e-81 306.2 366 49.2
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.4e-80 303.5 359 49.3
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.4e-80 303.5 374 51.1
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 3.1e-80 303.1 197 66.5
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.2e-80 302.4 317 51.7
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 6.8e-80 302.0 380 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.3e-78 297.7 315 52.4
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.9e-77 293.9 309 50.5
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-73 281.2 302 50.3
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.8e-72 277.3 320 48.8
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.9e-62 243.4 329 47.1
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.9e-60 235.3 201 58.2
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.0e-59 235.0 348 44.0
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.3e-59 233.8 319 41.7
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 3.0e-59 233.4 324 46.0
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 8.7e-51 205.3 313 41.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 8.2e-49 198.7 191 45.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.0e-46 191.8 178 55.1
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 8.4e-46 188.7 334 37.4
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 4.1e-40 169.9 93 78.5
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.2e-29 133.7 74 74.3
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.8e-27 127.9 74 73.0
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 7.7e-23 112.5 110 43.6
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 5.3e-16 89.7 66 77.3
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 6.8e-11 72.8 38 73.7
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-10 71.6 48 60.4
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 8.5e-06 55.8 65 72.3


User provided reference genes

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