Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 6.2e-94 347.4 174 100.0
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 1.1e-69 266.9 172 84.3
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 1.3e-59 233.4 168 69.0
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 3.4e-52 208.8 171 70.2
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 6.5e-51 204.5 174 62.6
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 6.5e-51 204.5 176 63.1
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 6.5e-51 204.5 176 63.1
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 6.5e-51 204.5 173 63.6
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 1.2e-49 200.3 176 65.9
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 1.0e-48 197.2 174 62.1
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 2.0e-47 193.0 181 64.6
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 1.7e-46 189.9 157 67.5
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 3.5e-44 182.2 195 56.4
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 3.6e-41 172.2 184 56.0
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 2.2e-38 162.9 164 54.9
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 3.1e-37 159.1 185 44.3
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.7e-36 156.0 168 50.6
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 5.9e-36 154.8 168 51.2
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 7.7e-36 154.5 168 53.6
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.2e-35 152.9 168 47.6
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 8.5e-35 151.0 164 50.0
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 1.1e-34 150.6 181 45.9
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 1.5e-34 150.2 164 45.7
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 2.5e-34 149.4 166 51.8
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 2.5e-34 149.4 163 48.5
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.6e-33 146.7 172 44.2
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 3.6e-33 145.6 171 44.4
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 4.7e-33 145.2 175 42.3
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 6.1e-33 144.8 159 51.6
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 8.0e-33 144.4 157 47.1
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 3.0e-32 142.5 172 43.6
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 3.0e-32 142.5 167 49.7
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 4.0e-32 142.1 172 48.3
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 4.0e-32 142.1 164 44.5
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 8.8e-32 141.0 184 45.7
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 7.5e-31 137.9 134 53.7
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 9.8e-31 137.5 163 49.7
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 1.7e-30 136.7 157 44.6
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 2.8e-30 136.0 175 41.7
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 4.8e-30 135.2 169 46.2
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 4.8e-30 135.2 164 48.8
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 1.1e-29 134.0 171 48.5
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 1.1e-29 134.0 173 40.5
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 3.1e-29 132.5 164 47.6
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 3.1e-29 132.5 177 48.6
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 4.1e-29 132.1 135 57.8
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 5.4e-29 131.7 161 41.6
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 9.1e-29 131.0 164 46.3
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 1.2e-28 130.6 177 47.5
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 1.6e-28 130.2 178 46.1
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 2.0e-28 129.8 168 39.3
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 2.7e-28 129.4 158 45.6
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 3.5e-28 129.0 152 42.8
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 4.5e-28 128.6 168 39.3
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 1.0e-27 127.5 160 45.6
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 2.3e-27 126.3 135 46.7
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 2.3e-27 126.3 170 44.7
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 2.3e-27 126.3 153 41.2
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 3.8e-27 125.6 133 46.6
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 1.1e-26 124.0 156 44.9
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 1.1e-26 124.0 153 41.2
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 1.1e-26 124.0 158 46.8
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 1.5e-26 123.6 158 41.8
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 1.5e-26 123.6 134 53.0
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 1.9e-26 123.2 133 44.4
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 1.9e-26 123.2 136 48.5
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 2.5e-26 122.9 131 43.5
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 3.3e-26 122.5 141 43.3
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 4.2e-26 122.1 128 44.5
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 5.5e-26 121.7 133 44.4
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 5.5e-26 121.7 105 53.3
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 7.2e-26 121.3 179 44.7
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 4.7e-25 118.6 174 42.5
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 8.0e-25 117.9 103 51.5
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 1.4e-24 117.1 111 47.7
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 2.3e-24 116.3 170 41.8
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 2.3e-24 116.3 132 50.0
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 2.3e-24 116.3 132 50.0
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 2.3e-24 116.3 132 50.0
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 2.3e-24 116.3 136 50.7
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 2.3e-24 116.3 100 52.0
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 4.0e-24 115.5 134 44.0
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 5.2e-24 115.2 101 50.5
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 5.2e-24 115.2 135 43.0
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 6.8e-24 114.8 134 48.5
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 6.8e-24 114.8 156 46.2
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 6.8e-24 114.8 135 48.1
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 4.4e-23 112.1 103 50.5
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 7.5e-23 111.3 132 51.5
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 2.2e-22 109.8 136 50.0
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 6.3e-22 108.2 137 40.1
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 8.3e-22 107.8 129 49.6
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 5.4e-21 105.1 100 46.0
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 9.2e-21 104.4 133 43.6
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 1.2e-20 104.0 101 48.5
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 3.5e-20 102.4 104 48.1
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 1.0e-19 100.9 150 38.0
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 5.0e-19 98.6 136 36.8
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 2.1e-17 93.2 111 38.7
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 1.4e-16 90.5 111 39.6
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 3.7e-14 82.4 101 43.6
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 8.3e-14 81.3 122 40.2
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 2.7e-12 76.3 65 52.3
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 1.1e-10 70.9 65 50.8
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 5.2e-08 62.0 64 48.4
CBR_g39816 Chara braunii HOM05D007181 ORTHO05D008722 6.8e-08 61.6 81 38.3
ATR0099G072 Amborella trichopoda HOM05D007181 ORTHO05D008722 9.8e-07 57.8 72 50.0
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 2.2e-06 56.6 60 38.3


User provided reference genes

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