Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 1.7e-35 152.1 75 100.0
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 4.8e-35 150.6 75 98.7
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 3.4e-33 144.4 75 94.7
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 5.0e-32 140.6 75 89.3
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 3.2e-31 137.9 75 88.0
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 4.2e-31 137.5 75 86.7
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 9.4e-31 136.3 75 86.7
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 9.4e-31 136.3 75 86.7
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 9.4e-31 136.3 75 86.7
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 6.1e-30 133.7 74 83.8
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 6.1e-30 133.7 74 83.8
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 3.9e-29 131.0 72 84.7
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 5.7e-28 127.1 67 89.6
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.8e-26 122.1 72 80.6
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.8e-26 122.1 72 80.6
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 1.8e-26 122.1 72 80.6
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 1.8e-26 122.1 71 77.5
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 3.1e-26 121.3 74 77.0
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 9.1e-26 119.8 71 76.1
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 1.5e-25 119.0 72 73.6
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 4.5e-25 117.5 74 70.3
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 7.7e-25 116.7 71 74.6
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.0e-24 116.3 72 73.6
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.3e-24 115.9 71 76.1
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.7e-24 115.5 71 73.2
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 1.7e-24 115.5 75 68.0
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 1.7e-24 115.5 68 77.9
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 2.9e-24 114.8 68 77.9
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.9e-24 114.8 68 77.9
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.9e-24 114.8 68 77.9
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.8e-24 114.4 68 76.5
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 3.8e-24 114.4 68 77.9
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 5.0e-24 114.0 71 71.8
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 8.5e-24 113.2 61 86.9
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 8.5e-24 113.2 68 76.5
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 1.4e-23 112.5 68 76.5
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 1.4e-23 112.5 69 75.4
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 1.4e-23 112.5 69 75.4
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 1.4e-23 112.5 68 76.5
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.4e-23 112.5 68 76.5
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 1.9e-23 112.1 71 71.8
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 1.9e-23 112.1 68 76.5
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 2.5e-23 111.7 69 73.9
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 3.2e-23 111.3 68 72.1
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 4.2e-23 110.9 72 70.8
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 5.5e-23 110.5 70 70.0
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 5.5e-23 110.5 73 68.5
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 5.5e-23 110.5 68 76.5
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 5.5e-23 110.5 69 73.9
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 7.2e-23 110.2 69 72.5
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 7.2e-23 110.2 68 73.5
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 1.2e-22 109.4 68 73.5
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 1.6e-22 109.0 67 71.6
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 2.1e-22 108.6 68 75.0
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 2.7e-22 108.2 69 72.5
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 3.6e-22 107.8 68 70.6
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 4.7e-22 107.5 65 76.9
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 4.7e-22 107.5 68 72.1
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 6.1e-22 107.1 70 74.3
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 6.1e-22 107.1 65 75.4
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 8.0e-22 106.7 71 67.6
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 8.0e-22 106.7 71 67.6
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 1.0e-21 106.3 70 68.6
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 1.4e-21 105.9 68 70.6
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 1.4e-21 105.9 68 70.6
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 1.4e-21 105.9 68 70.6
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 1.4e-21 105.9 73 65.8
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 3.0e-21 104.8 68 69.1
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 6.7e-21 103.6 65 73.8
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 6.7e-21 103.6 72 70.8
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 2.0e-20 102.1 69 66.7
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 2.6e-20 101.7 71 69.0
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 9.7e-20 99.8 82 58.5
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 1.3e-19 99.4 68 69.1
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 2.8e-19 98.2 71 63.4
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 4.8e-19 97.4 69 69.6
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 1.4e-18 95.9 68 67.6
SEGI_10041 Sequoiadendron giganteum HOM05D006941 ORTHO05D008361 3.1e-18 94.7 71 59.2
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 4.1e-18 94.4 65 69.2
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 5.3e-18 94.0 81 58.0
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 5.3e-18 94.0 69 65.2
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 1.6e-17 92.4 65 67.7
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 4.5e-17 90.9 49 85.7
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 5.9e-17 90.5 81 56.8
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 7.7e-17 90.1 68 67.6
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 1.7e-16 89.0 92 53.3
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 3.8e-16 87.8 75 62.7
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.9e-15 85.5 52 76.9
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 7.2e-15 83.6 68 61.8
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 9.4e-15 83.2 62 59.7
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 2.7e-14 81.6 71 59.2
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 2.7e-14 81.6 133 38.3
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 1.4e-13 79.3 127 38.6
RcHm_v2.0_Chr1g0363231 Rosa chinensis HOM05D006941 ORTHO05D008361 2.3e-13 78.6 49 73.5
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 9.1e-10 66.6 39 76.9
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 1.2e-09 66.2 39 79.5
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 2.0e-09 65.5 39 74.4
Medtr2g048470 Medicago truncatula HOM05D006941 ORTHO05D008361 4.5e-09 64.3 57 57.9
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 5.9e-09 63.9 35 82.9
Dinv16400 Davidia involucrata HOM05D006941 ORTHO05D008361 1.0e-08 63.2 49 57.1
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 1.3e-08 62.8 39 74.4
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 1.7e-08 62.4 165 28.5
Cpa.g.sc16.95 Carica papaya HOM05D006941 ORTHO05D008361 2.2e-08 62.0 32 81.2
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 6.5e-08 60.5 39 71.8
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 1.1e-07 59.7 43 60.5
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 1.5e-07 59.3 39 69.2
Pp3c4_20400 Physcomitrium patens HOM05D006941 ORTHO05D008361 4.2e-07 57.8 56 51.8
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 5.5e-07 57.4 40 65.0
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 5.5e-07 57.4 37 67.6
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 5.5e-07 57.4 38 68.4
AagrBONN_evm.TU.Sc2ySwM_344.628 Anthoceros agrestis HOM05D006941 ORTHO05D008361 9.4e-07 56.6 40 60.0
MCO13G197 Micromonas commoda HOM05D055842 ORTHO05D008361 4.7e-06 54.3 46 58.7


User provided reference genes

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