Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 8.6e-271 936.4 479 100.0
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.1e-269 931.8 479 99.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 2.5e-254 881.7 480 94.6
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 1.2e-243 846.3 480 92.5
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 1.3e-231 806.2 481 88.8
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 2.3e-231 805.4 483 88.8
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 7.1e-225 783.9 490 86.7
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 2.6e-203 712.2 496 79.4
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 4.2e-201 704.9 496 78.6
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 3.0e-199 698.7 500 79.0
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 2.0e-198 696.0 521 76.8
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 3.8e-178 628.6 565 66.4
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.3e-169 599.0 479 71.2
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.1e-164 582.0 480 69.0
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 2.8e-152 542.7 478 65.7
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 2.4e-148 529.6 477 64.4
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 2.4e-148 529.6 476 63.9
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 8.6e-146 521.2 481 64.2
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 8.6e-146 521.2 477 63.1
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 9.6e-145 517.7 478 63.6
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.8e-144 516.2 481 62.8
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 6.2e-144 515.0 480 63.5
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 9.9e-142 507.7 484 63.4
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.7e-141 506.9 478 62.3
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.9e-141 506.1 475 62.1
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 6.4e-141 505.0 477 62.1
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.4e-140 503.8 484 61.2
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 7.1e-140 501.5 477 61.6
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 9.3e-140 501.1 479 60.8
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 3.0e-138 496.1 478 61.1
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.9e-137 493.4 440 63.4
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 4.3e-137 492.3 478 60.7
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 7.3e-137 491.5 478 60.7
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 9.6e-137 491.1 479 59.9
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 1.6e-136 490.3 477 58.5
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.8e-136 488.8 478 60.5
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.2e-136 488.4 478 60.3
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.4e-135 487.3 478 60.3
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 4.0e-135 485.7 476 61.6
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 4.0e-135 485.7 478 60.0
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.9e-135 485.0 478 60.0
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 5.8e-134 481.9 480 60.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 7.6e-134 481.5 479 58.5
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.7e-133 480.3 481 58.0
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 8.4e-133 478.0 475 59.6
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.9e-132 476.9 480 60.4
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.6e-131 473.8 480 59.0
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.0e-130 471.1 481 57.6
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.7e-130 470.3 478 58.2
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.3e-130 469.9 478 57.3
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.9e-130 469.2 475 59.4
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 6.6e-130 468.4 510 56.5
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.5e-129 467.2 481 57.6
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.5e-129 467.2 483 59.2
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 4.3e-129 465.7 476 57.6
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.3e-129 465.7 481 60.1
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.6e-128 463.8 491 57.8
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 4.8e-128 462.2 480 56.9
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 8.1e-128 461.5 497 56.7
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.1e-127 461.1 497 56.3
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.2e-126 457.6 480 56.5
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 5.8e-126 455.3 504 54.4
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.4e-124 450.7 486 56.2
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.2e-124 449.1 478 56.9
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 3.5e-123 446.0 481 55.9
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 4.6e-123 445.7 534 51.9
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.3e-120 437.6 444 58.6
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 3.7e-120 436.0 510 53.1
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 6.2e-120 435.3 516 52.7
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.1e-119 433.0 541 52.3
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 6.9e-119 431.8 478 55.0
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.2e-118 431.0 491 53.8
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.0e-117 427.9 482 54.8
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 6.5e-117 425.2 490 54.7
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 6.5e-117 425.2 479 54.9
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 1.4e-116 424.1 503 52.1
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 5.5e-116 422.2 499 52.7
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 9.3e-116 421.4 519 52.6
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 2.7e-115 419.9 490 53.5
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 4.6e-115 419.1 492 53.0
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.0e-114 417.9 483 54.0
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.3e-114 417.5 521 51.1
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 1.8e-111 407.1 485 52.8
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 6.9e-111 405.2 527 50.7
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 6.9e-111 405.2 375 62.4
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 2.0e-110 403.7 554 49.5
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 2.6e-110 403.3 482 51.2
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 4.5e-110 402.5 507 52.7
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 3.8e-109 399.4 478 52.5
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.4e-108 397.5 554 49.1
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.3e-104 384.4 445 53.3
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 2.2e-104 383.6 488 50.6
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.1e-103 381.3 495 50.5
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 2.0e-102 377.1 483 51.3
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 2.9e-101 373.2 356 60.7
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.1e-100 371.3 356 59.8
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 2.5e-100 370.2 561 46.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.1e-99 367.1 488 48.8
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.1e-98 362.5 542 45.9
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.2e-96 357.1 425 53.9
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 4.5e-94 349.4 494 49.8
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 3.6e-91 339.7 437 49.4
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 8.8e-90 335.1 233 79.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 8.8e-90 335.1 526 44.9
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.6e-89 333.6 523 44.7
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.3e-88 331.3 233 78.5
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.6e-86 324.3 331 58.6
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 3.6e-83 313.2 225 76.9
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 5.2e-82 309.3 329 59.3
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.5e-76 291.2 264 65.5
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 3.4e-65 253.4 258 57.4
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 8.3e-64 248.8 270 53.0
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.8e-58 229.2 176 65.9
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 2.3e-53 214.2 507 34.1
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 3.3e-52 210.3 361 41.0
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.1e-51 207.6 220 57.3
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.2e-46 191.8 128 79.7
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.2e-46 191.8 446 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.0e-45 188.7 438 35.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 4.3e-44 183.3 507 33.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.4e-34 151.8 494 31.2
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.3e-32 145.2 434 32.0
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.4e-31 141.7 377 35.3
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 7.8e-30 136.0 472 29.7
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 7.3e-28 129.4 450 29.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.1e-26 125.6 459 29.0
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.1e-23 115.5 160 48.8
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.2e-23 114.0 139 51.1
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 5.4e-23 113.2 186 43.5
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 3.0e-21 107.5 86 70.9
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 5.6e-20 103.2 119 52.9
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 8.4e-16 89.4 66 69.7
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 1.4e-15 88.6 66 69.7
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 9.0e-10 69.3 109 46.8
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.6e-06 58.5 88 42.0


User provided reference genes

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