Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 4.5e-231 804.3 424 100.0
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.0e-219 766.5 424 95.8
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 4.9e-217 757.7 424 93.6
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 8.0e-204 713.8 424 87.0
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.2e-202 709.9 424 86.1
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 4.4e-202 708.0 424 87.3
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.7e-201 706.1 424 85.6
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.7e-201 706.1 424 85.6
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.7e-198 696.0 424 84.7
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 5.0e-198 694.5 424 84.7
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 8.6e-198 693.7 424 84.4
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 6.6e-190 667.5 424 80.4
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 1.2e-186 656.8 424 81.4
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 7.6e-146 521.2 427 64.4
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 5.1e-134 481.9 439 58.8
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 8.8e-134 481.1 433 60.5
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.8e-131 473.4 433 59.1
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 1.1e-128 464.2 438 57.3
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 7.2e-128 461.5 433 57.0
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.4e-126 457.2 432 57.4
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 3.9e-126 455.7 437 57.7
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 5.7e-125 451.8 434 58.1
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 2.2e-124 449.9 404 58.9
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.1e-123 447.6 440 56.4
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 2.4e-123 446.4 438 56.4
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 4.5e-122 442.2 434 55.8
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 2.9e-121 439.5 432 55.1
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 2.9e-121 439.5 432 55.1
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 2.5e-120 436.4 434 55.3
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.6e-119 433.7 381 59.8
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 1.6e-119 433.7 406 56.2
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 2.0e-117 426.8 402 55.7
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 2.0e-117 426.8 417 55.9
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 2.6e-117 426.4 426 54.7
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 2.6e-117 426.4 412 54.6
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 5.7e-117 425.2 434 53.9
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 7.0e-115 418.3 436 54.8
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 5.9e-114 415.2 410 55.9
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.7e-113 413.7 375 57.9
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.7e-113 413.7 416 53.6
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 3.8e-113 412.5 407 54.1
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.5e-112 410.6 440 54.3
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.9e-112 410.2 405 52.8
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.9e-112 410.2 407 53.6
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.6e-111 407.1 446 52.7
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 1.4e-110 404.1 408 52.2
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 2.3e-110 403.3 406 53.2
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 6.8e-110 401.7 400 53.5
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 2.6e-109 399.8 400 53.0
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 4.4e-109 399.1 426 51.6
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 1.3e-108 397.5 425 50.8
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 2.2e-108 396.7 427 51.5
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 2.2e-108 396.7 428 51.9
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.4e-107 394.0 400 54.0
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 1.0e-105 387.9 431 51.5
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 2.9e-105 386.3 444 51.8
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.2e-103 380.9 396 52.3
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.1e-103 380.2 429 49.7
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.0e-101 373.6 415 51.3
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 1.3e-100 370.9 415 51.3
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 6.3e-100 368.6 426 49.3
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 3.1e-99 366.3 414 50.2
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 4.1e-99 365.9 352 55.4
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.7e-98 363.2 438 46.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.0e-97 361.3 415 50.6
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 3.8e-97 359.4 410 49.5
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 6.6e-97 358.6 416 47.8
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 8.6e-97 358.2 404 50.7
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 1.1e-96 357.8 399 48.9
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 7.3e-96 355.1 404 50.5
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 7.3e-96 355.1 416 47.6
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 1.2e-95 354.4 382 49.7
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 1.0e-94 351.3 464 44.2
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 6.8e-94 348.6 302 57.3
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 6.8e-94 348.6 401 50.6
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.3e-92 344.4 417 48.2
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.2e-92 343.6 433 46.9
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 5.0e-89 332.4 406 46.8
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.9e-88 330.5 436 45.0
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.2e-87 327.8 374 49.5
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 2.8e-87 326.6 429 44.8
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 1.5e-85 320.9 431 44.3
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.3e-84 317.8 352 52.8
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 1.7e-84 317.4 408 42.6
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 7.0e-83 312.0 347 53.9
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 1.3e-81 307.8 431 42.0
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 3.1e-78 296.6 407 41.8
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 3.0e-73 280.0 270 52.2
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 1.5e-72 277.7 311 51.8
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.9e-72 277.3 333 52.0
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 9.9e-69 265.0 432 40.7
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 5.1e-65 252.7 286 51.4
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 2.0e-61 240.7 367 37.3
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 4.4e-61 239.6 397 38.3
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 3.0e-57 226.9 422 33.4
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.5e-56 223.8 205 52.2
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 5.6e-56 222.6 367 39.8
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 2.4e-54 217.2 394 34.5
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 3.5e-50 203.4 234 47.4
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 9.0e-46 188.7 200 48.0
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 9.3e-35 152.1 184 51.6
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 5.3e-30 136.3 198 40.4
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 7.2e-27 125.9 88 65.9
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.9e-18 95.9 119 47.1
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.0e-17 95.5 64 67.2
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.8e-15 86.7 61 65.6
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.4e-14 84.3 54 66.7
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.8e-07 60.8 35 74.3


User provided reference genes

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