Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G44670 Arabidopsis lyrata HOM05D021205 ORTHO05D018443 1.0e-162 576.6 284 100.0
CARHR172850 Cardamine hirsuta HOM05D021205 ORTHO05D018443 5.7e-36 155.6 185 46.5
AL5G41570 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 4.5e-17 92.8 163 38.7
CARHR167770 Cardamine hirsuta HOM05D001456 ORTHO05D011781 6.5e-16 89.0 163 38.0
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 1.1e-15 88.2 181 32.6
BolC2t06080H Brassica oleracea HOM05D020236 ORTHO05D018443 4.2e-15 86.3 223 30.9
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 4.7e-14 82.8 173 32.9
BcaC03g13027 Brassica carinata HOM05D020236 ORTHO05D018443 1.8e-13 80.9 190 30.5
C02p00820 Brassica napus HOM05D020236 ORTHO05D018443 2.3e-13 80.5 213 29.1
C09p72960 Brassica napus HOM05D021205 ORTHO05D031731 1.1e-12 78.2 239 29.7
BolC9t60032H Brassica oleracea HOM05D021205 ORTHO05D031731 1.1e-12 78.2 239 29.7
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.0e-12 77.4 175 30.3
AL7G51710 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 2.0e-12 77.4 167 32.9
CARHR172830 Cardamine hirsuta HOM05D001456 ORTHO05D011865 2.0e-12 77.4 155 35.5
AL7G21380 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 5.7e-12 75.9 163 30.7
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 1.3e-11 74.7 185 30.8
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.7e-11 74.3 153 32.7
AL4G34570 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.7e-11 74.3 153 32.7
BcaB02g08393 Brassica carinata HOM05D010965 ORTHO05D016023 2.2e-11 73.9 169 32.0
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 2.2e-11 73.9 161 31.7
CARHR166160 Cardamine hirsuta HOM05D011679 ORTHO05D012451 2.8e-11 73.6 193 32.1
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 4.8e-11 72.8 161 31.7
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 4.8e-11 72.8 203 30.5
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 4.8e-11 72.8 163 29.4
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 1.1e-10 71.6 191 29.8
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 1.4e-10 71.2 189 28.6
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 1.4e-10 71.2 149 31.5
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 1.8e-10 70.9 162 31.5
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 1.8e-10 70.9 162 31.5
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 3.1e-10 70.1 170 30.6
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 3.1e-10 70.1 137 32.8
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 4.1e-10 69.7 185 29.2
SEGI_28425 Sequoiadendron giganteum HOM05D001456 ORTHO05D002799 4.1e-10 69.7 199 26.1
Carub.0007s1646 Capsella rubella HOM05D001456 ORTHO05D011865 7.0e-10 68.9 104 34.6
SMO200G0216 Selaginella moellendorffii HOM05D001456 ORTHO05D004886 9.1e-10 68.6 163 28.2
BcaC02g09040 Brassica carinata HOM05D010965 ORTHO05D016023 1.6e-09 67.8 138 31.9
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 1.6e-09 67.8 171 31.0
AL5G20620 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 2.0e-09 67.4 163 30.7
Thhalv10006264m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 2.0e-09 67.4 172 32.0
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 3.5e-09 66.6 111 33.3
AL1G52920 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 4.5e-09 66.2 97 35.1
AT3G61090 Arabidopsis thaliana HOM05D001456 ORTHO05D011781 5.9e-09 65.9 199 27.1
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 5.9e-09 65.9 228 30.3
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 7.7e-09 65.5 228 30.3
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 7.7e-09 65.5 175 29.1
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.0e-08 65.1 130 26.2
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 1.3e-08 64.7 166 31.3
Carub.0007s1746 Capsella rubella HOM05D001456 ORTHO05D011865 1.3e-08 64.7 98 33.7
A09p52600 Brassica napus HOM05D016731 ORTHO05D011781 1.7e-08 64.3 201 29.9
C03p25290 Brassica napus HOM05D014187 ORTHO05D016747 1.7e-08 64.3 130 28.5
BolC3t14923H Brassica oleracea HOM05D014187 ORTHO05D016747 1.7e-08 64.3 130 28.5
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 1.7e-08 64.3 198 28.3
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 1.7e-08 64.3 168 27.4
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 1.7e-08 64.3 168 27.4
Aa31LG10G16120 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.2e-08 63.9 167 28.7
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 2.2e-08 63.9 165 27.3
Nn3g21907 Nelumbo nucifera HOM05D001456 ORTHO05D002799 2.2e-08 63.9 171 26.9
AT3G62050 Arabidopsis thaliana HOM05D001456 ORTHO05D012062 3.8e-08 63.2 135 31.9
Thhalv10022152m.g Eutrema salsugineum HOM05D001456 ORTHO05D015898 3.8e-08 63.2 166 30.1
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 3.8e-08 63.2 164 29.3
Thhalv10006280m.g Eutrema salsugineum HOM05D014685 ORTHO05D011865 5.0e-08 62.8 150 28.7
AL5G43300 Arabidopsis lyrata HOM05D001456 ORTHO05D011781 6.5e-08 62.4 199 28.6
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 6.5e-08 62.4 177 27.7
BraA03t11377Z Brassica rapa HOM05D014187 ORTHO05D016747 8.5e-08 62.0 141 27.0
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 1.1e-07 61.6 190 26.8
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-07 61.2 151 30.5
Lj9A230G20 Lonicera japonica HOM05D001456 ORTHO05D002799 1.5e-07 61.2 160 28.1
Lju99A5G39 Lonicera japonica HOM05D001456 ORTHO05D002799 1.5e-07 61.2 160 28.1
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 1.5e-07 61.2 173 27.2
AL1G58410 Arabidopsis lyrata HOM05D021205 ORTHO05D010099 1.9e-07 60.8 156 28.8
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.9e-07 60.8 180 27.8
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 1.9e-07 60.8 180 27.8
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 1.9e-07 60.8 168 28.0
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 1.9e-07 60.8 168 28.0
AL5G39260 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 2.5e-07 60.5 150 29.3
BraA09t40690Z Brassica rapa HOM05D016731 ORTHO05D011781 2.5e-07 60.5 174 29.9
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 2.5e-07 60.5 180 27.8
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 3.2e-07 60.1 193 28.0
A07p06090 Brassica napus HOM05D014187 ORTHO05D016747 4.2e-07 59.7 141 25.5
C07p03980 Brassica napus HOM05D014187 ORTHO05D016747 4.2e-07 59.7 141 25.5
Prupe.7G207600 Prunus persica HOM05D004262 ORTHO05D004886 4.2e-07 59.7 222 27.0
vmacro02363 Vaccinium macrocarpon HOM05D001456 ORTHO05D002799 4.2e-07 59.7 247 23.9
C01p42700 Brassica napus HOM05D001456 ORTHO05D015898 5.5e-07 59.3 207 22.2
C06p00070 Brassica napus HOM05D014187 ORTHO05D016747 5.5e-07 59.3 141 24.8
AL5G43310 Arabidopsis lyrata HOM05D010965 ORTHO05D011781 7.2e-07 58.9 178 27.5
AT4G30760 Arabidopsis thaliana HOM05D001456 ORTHO05D011865 7.2e-07 58.9 147 27.2
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 7.2e-07 58.9 166 27.7
Psat3g018040 Pisum sativum HOM05D001456 ORTHO05D002799 7.2e-07 58.9 159 28.9
Sabra13G0002500 Salix brachista HOM05D001456 ORTHO05D002799 7.2e-07 58.9 169 29.6
BcaC06g36465 Brassica carinata HOM05D014187 ORTHO05D016747 9.4e-07 58.5 141 24.8
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 9.4e-07 58.5 170 27.1
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 9.4e-07 58.5 180 27.2
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 1.2e-06 58.2 165 27.3
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 1.6e-06 57.8 150 29.3
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 1.6e-06 57.8 150 29.3
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 1.6e-06 57.8 150 29.3
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 1.6e-06 57.8 163 27.6
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 2.1e-06 57.4 197 26.4
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.7e-06 57.0 186 26.3
Potri.005G003800 Populus trichocarpa HOM05D001456 ORTHO05D002799 2.7e-06 57.0 166 27.1
RcHm_v2.0_Chr2g0119261 Rosa chinensis HOM05D004262 ORTHO05D004886 2.7e-06 57.0 203 24.6
A04p01060 Brassica napus HOM05D001456 ORTHO05D033337 3.6e-06 56.6 121 33.1
Sabra05G0001000 Salix brachista HOM05D001456 ORTHO05D002799 3.6e-06 56.6 166 27.1
AT3G61100 Arabidopsis thaliana HOM05D010965 ORTHO05D011781 4.7e-06 56.2 183 26.8
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 6.1e-06 55.8 192 25.5
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 6.1e-06 55.8 134 29.1
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 8.0e-06 55.5 165 24.8
C03p08290 Brassica napus HOM05D020281 ORTHO05D021971 8.0e-06 55.5 140 30.7
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 8.0e-06 55.5 165 24.8
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 8.0e-06 55.5 165 24.8
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 8.0e-06 55.5 167 25.1


User provided reference genes

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