Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 0.0e+00 1143.3 711 100.0
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.6e-303 1045.0 714 93.3
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.0e-272 941.4 719 80.1
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 5.7e-271 937.6 719 79.8
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 2.9e-254 882.1 723 77.6
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 2.7e-252 875.5 723 77.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.9e-250 869.4 723 76.6
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.3e-250 868.2 719 76.4
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 9.5e-250 867.1 723 76.5
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 6.2e-249 864.4 723 76.3
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 9.9e-247 857.1 721 75.5
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 5.6e-242 841.3 734 73.8
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.2e-241 840.1 731 74.0
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 3.6e-233 812.0 720 72.8
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 9.6e-226 787.3 731 67.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.1e-216 757.3 649 74.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 5.3e-216 755.0 727 69.2
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.9e-212 741.1 730 72.5
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.1e-210 737.3 735 69.5
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 3.1e-200 702.6 726 64.3
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.9e-199 698.4 729 68.2
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 4.1e-192 675.6 737 68.4
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-176 624.0 707 62.1
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 5.9e-175 618.6 751 60.9
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 1.5e-173 614.0 737 63.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.0e-171 607.8 774 53.6
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 4.0e-171 605.9 774 53.2
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.8e-169 599.7 774 51.4
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.1e-160 571.2 785 52.1
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 5.9e-159 565.5 793 47.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.1e-157 561.2 746 54.6
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 7.3e-157 558.5 781 47.6
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.1e-156 555.4 764 53.5
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 5.2e-155 552.4 744 48.3
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.0e-154 550.4 764 57.3
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 4.4e-154 549.3 798 47.7
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 4.4e-154 549.3 788 47.0
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.3e-153 547.7 721 48.5
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 1.3e-153 547.7 716 55.2
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 3.7e-153 546.2 779 48.5
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.4e-153 545.4 771 47.0
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.2e-151 541.2 771 46.4
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.0e-151 540.4 765 56.6
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.3e-150 537.7 761 51.9
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 1.3e-150 537.7 802 46.3
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.5e-149 531.6 791 46.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 6.2e-148 528.9 707 48.7
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.2e-147 525.8 784 46.3
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.0e-146 523.9 459 73.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 5.8e-146 522.3 716 48.2
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 9.8e-146 521.5 756 47.9
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 8.3e-145 518.5 706 50.6
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 8.3e-145 518.5 716 51.0
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-144 517.7 773 47.5
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.9e-144 517.3 752 52.0
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 3.5e-143 513.1 703 48.1
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 7.8e-143 511.9 688 49.3
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 7.8e-143 511.9 738 48.8
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 3.0e-142 510.0 747 48.3
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.0e-142 510.0 771 47.9
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.6e-142 508.8 773 47.9
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 4.3e-141 506.1 701 47.5
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 9.5e-141 505.0 773 48.1
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 9.5e-141 505.0 770 47.8
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 9.5e-141 505.0 831 43.3
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.7e-140 502.7 773 48.1
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 2.3e-139 500.4 798 43.9
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.1e-139 500.0 755 45.3
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.0e-138 497.3 788 49.5
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 7.5e-138 495.4 763 45.5
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 9.8e-138 495.0 701 50.2
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.7e-137 494.2 700 53.7
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 2.9e-137 493.4 828 43.2
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 3.7e-137 493.0 681 47.0
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.9e-136 490.7 781 45.7
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.4e-136 490.3 702 48.1
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 3.2e-136 490.0 767 46.8
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.1e-136 489.6 794 47.2
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.6e-135 487.6 702 48.1
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 2.7e-135 486.9 750 44.5
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.7e-134 484.2 762 44.5
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-134 483.4 705 46.1
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-134 483.4 671 45.9
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 3.0e-134 483.4 717 46.6
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.9e-134 483.0 698 47.4
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.1e-133 481.5 703 50.8
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.5e-133 480.3 699 47.4
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 3.3e-133 479.9 715 50.2
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.3e-133 479.6 722 51.7
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 7.3e-133 478.8 717 51.7
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 9.5e-133 478.4 720 49.7
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.6e-132 477.6 769 49.8
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.6e-132 477.6 723 45.9
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.6e-132 477.6 724 48.3
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 2.1e-132 477.2 767 47.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.1e-132 477.2 769 46.7
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 3.1e-131 473.4 768 52.9
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 5.2e-131 472.6 843 46.6
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.9e-130 468.4 792 45.1
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.3e-129 468.0 774 51.2
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.3e-129 468.0 775 50.5
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.7e-129 467.6 700 51.9
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 4.1e-128 463.0 689 46.6
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 5.4e-128 462.6 803 42.3
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 7.8e-127 458.8 707 49.9
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 7.8e-127 458.8 931 38.5
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.3e-126 458.0 690 49.9
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 5.1e-126 456.1 736 43.6
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 2.4e-123 447.2 769 51.8
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 2.0e-122 444.1 728 42.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.2e-120 436.4 607 53.4
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 5.4e-120 436.0 728 44.1
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 3.5e-119 433.3 774 41.6
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 4.6e-119 433.0 782 47.1
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.3e-118 430.6 455 55.6
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.6e-117 426.0 764 43.7
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.6e-111 407.9 628 44.3
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 3.5e-111 406.8 690 48.1
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 6.6e-110 402.5 804 42.7
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.6e-109 399.4 762 42.9
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 7.4e-109 399.1 425 55.3
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.4e-107 394.8 704 45.9
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 9.9e-106 388.7 615 44.9
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 6.4e-105 386.0 615 44.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.9e-104 384.4 697 43.6
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 5.1e-102 376.3 754 40.5
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 4.0e-99 366.7 740 41.8
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.0e-94 352.1 740 37.2
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 3.3e-93 347.1 717 38.2
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 5.7e-93 346.3 787 38.5
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 2.0e-90 337.8 679 39.5
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 2.5e-88 330.9 729 36.5
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-86 325.1 314 65.6
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 6.3e-84 316.2 836 34.8
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 8.2e-84 315.8 355 54.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 8.2e-76 289.3 332 53.3
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.1e-75 287.3 277 57.8
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.9e-72 278.1 719 33.4
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 6.1e-63 246.5 608 35.2
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.5e-56 224.6 270 50.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.2e-55 222.2 295 50.8
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 3.1e-51 207.6 301 42.5
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 7.7e-50 203.0 287 50.9
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.6e-45 188.0 728 27.1
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 4.1e-43 180.6 403 37.5
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 3.5e-42 177.6 220 46.8
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 3.8e-41 174.1 375 37.1
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 5.6e-40 170.2 186 58.1
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 8.3e-36 156.4 223 49.8
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 8.6e-33 146.4 145 60.7
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 3.6e-31 141.0 295 42.4
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 6.8e-30 136.7 166 54.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-27 129.0 396 30.3
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.9e-27 128.6 182 49.5
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 9.5e-24 116.3 106 65.1
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-23 115.9 106 51.9
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 2.3e-22 111.7 145 49.0
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.4e-21 107.5 75 77.3
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 2.9e-20 104.8 413 37.8
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.3e-16 91.3 105 47.6
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.4e-14 85.9 107 51.4
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.8e-14 83.6 199 37.7
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-13 82.4 62 71.0
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.7e-12 79.0 83 56.6
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.7e-12 79.0 107 44.9
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 7.1e-11 73.6 242 26.4
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 9.2e-11 73.2 201 29.4
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-10 72.4 69 59.4
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 5.1e-09 67.4 241 29.5
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 9.0e-06 56.6 129 34.1


User provided reference genes

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