Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 2242.6 1128 100.0
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 2180.2 1128 96.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 2177.9 1128 97.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 2144.8 1129 95.1
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 2132.5 1128 94.6
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 2099.3 1131 92.8
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 2099.3 1131 92.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 2084.7 1131 92.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 2083.5 1131 92.1
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1957.6 1104 91.2
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1922.1 1129 86.9
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1891.7 1128 83.2
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1813.5 1158 80.0
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1754.6 1122 77.8
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1750.7 1121 76.8
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1746.5 1122 77.2
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1739.2 1122 76.9
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1738.4 1122 77.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1734.9 1095 78.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1732.2 1119 76.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1731.5 1126 76.1
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1731.1 1129 76.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1728.8 1117 76.6
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1723.0 1122 76.6
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1719.1 1122 75.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1714.5 1125 75.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1132 75.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1711.4 1122 75.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1709.5 1121 75.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1708.7 1121 75.6
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1706.0 1136 74.8
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1705.3 1118 75.4
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1704.9 1122 74.8
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1704.5 1117 75.6
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1122 75.3
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1698.3 1136 74.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1697.9 1122 75.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1697.2 1122 75.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1693.3 1123 76.2
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1691.0 1123 75.3
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1687.5 1124 74.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1687.2 1123 76.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1685.2 1182 71.7
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1685.2 1120 75.0
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1683.7 1123 75.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1677.1 1122 74.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1676.0 1125 74.5
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1675.6 1128 74.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1675.6 1125 74.5
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1148 72.8
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1674.1 1122 74.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1124 74.6
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1671.0 1122 74.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1670.6 1126 73.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1669.4 1119 73.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1669.1 1128 74.5
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1668.7 1126 73.7
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1662.5 867 95.4
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1662.5 1121 73.4
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1661.0 1120 73.9
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1658.7 1118 74.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1657.9 1126 73.4
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1653.3 1115 74.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1649.8 1124 73.9
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1645.6 1077 76.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1645.2 1129 73.2
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1643.6 1122 74.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1641.7 1123 72.8
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1641.7 1118 73.3
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1640.9 1125 72.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1638.6 1117 73.2
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1635.9 1187 69.9
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1629.0 1119 73.6
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1623.6 1124 71.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1615.5 1122 70.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1614.0 1121 70.9
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1612.4 1074 75.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1611.3 1040 76.4
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1607.0 1162 70.3
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1597.0 1123 70.8
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1596.6 1195 68.2
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1595.1 1079 73.4
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1587.4 1119 70.8
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1571.6 1245 66.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1563.5 823 93.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1546.9 1318 62.9
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1536.2 1148 69.3
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1531.9 1122 70.3
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1527.3 1125 68.7
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1486.1 1139 66.3
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1473.4 1164 66.5
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1461.8 951 76.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1448.7 1123 65.7
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1438.3 1130 64.7
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1437.6 1130 64.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1398.3 1155 63.9
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1347.0 861 76.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1331.2 837 79.2
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1325.8 833 79.4
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1319.7 978 69.1
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1204.5 1120 58.8
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1142.1 782 72.6
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1117.1 679 80.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 5.9e-310 1067.8 1142 50.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 9.7e-297 1023.8 1127 49.8
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 2.0e-289 999.6 1523 40.6
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.2e-285 986.1 1155 47.2
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.7e-269 933.3 1150 45.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 8.6e-253 877.9 1378 38.6
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.4e-247 860.5 668 63.6
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.4e-247 858.6 529 81.5
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 8.9e-242 841.3 671 65.7
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.8e-241 838.6 584 73.6
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-220 771.2 736 55.4
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.6e-195 687.6 587 60.6
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.3e-186 656.0 432 76.2
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 2.9e-184 650.2 451 70.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 6.3e-171 605.9 440 67.3
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.5e-167 594.0 591 51.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 8.0e-134 482.6 451 57.4
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.0e-128 463.4 317 71.9
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.4e-122 444.5 374 65.5
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 4.0e-117 427.2 332 69.6
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.4e-101 374.8 1086 29.2
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 3.8e-91 340.9 186 88.7
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 4.0e-85 320.9 1467 23.5
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.2e-84 319.3 767 31.0
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.6e-73 282.3 180 77.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.0e-73 280.4 289 52.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 9.0e-69 266.5 238 62.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 9.7e-63 246.5 217 69.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.2e-62 245.4 198 69.2
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.4e-60 238.0 189 60.8
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.2e-57 229.6 217 65.4
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.7e-57 227.6 294 46.3
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.5e-51 207.2 313 37.4
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.5e-47 196.1 212 50.0
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.8e-45 189.1 594 30.0
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 9.1e-45 186.8 328 40.5
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.2e-38 165.6 255 40.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.4e-37 162.2 761 25.2
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.9e-35 155.2 112 63.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.6e-33 149.4 169 51.5
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.0e-33 147.1 183 49.2
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.1e-29 136.7 74 90.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.1e-25 122.5 84 71.4
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.1e-25 120.9 183 43.7
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 4.0e-24 118.2 86 68.6
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.8e-24 117.5 85 60.0
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 5.7e-23 114.4 67 80.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.3e-22 113.2 86 68.6
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.8e-20 104.0 138 50.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.1e-18 100.1 64 73.4
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 3.0e-16 92.0 64 71.9
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.4e-15 88.6 75 58.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 5.8e-15 87.8 95 50.5
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 3.7e-14 85.1 161 34.2
A07p25530 Brassica napus HOM05D004297 ORTHO05D098686 8.3e-14 84.0 92 57.6
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 9.2e-13 80.5 60 65.0
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-12 80.1 80 55.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 3.5e-12 78.6 59 62.7
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.5e-12 78.6 56 67.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.9e-10 72.8 52 63.5
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 9.5e-10 70.5 42 73.8
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.8e-09 68.9 34 82.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.0e-09 67.4 43 67.4
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.0e-08 65.1 49 61.2
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.5e-07 63.2 47 61.7
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.2e-06 59.3 80 42.5


User provided reference genes

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