Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-230 802.7 411 100.0
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 8.3e-222 773.5 411 96.8
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.4e-213 746.1 409 92.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.0e-212 742.3 411 92.5
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 4.1e-205 718.0 411 89.5
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-204 716.5 411 90.0
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.2e-204 716.5 411 90.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.3e-203 713.0 411 88.6
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-203 712.6 411 88.6
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 6.6e-203 710.7 408 89.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.3e-202 708.4 411 87.6
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.1e-201 705.7 408 88.7
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 6.2e-201 704.1 411 87.3
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.8e-200 702.6 408 87.3
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-192 676.4 408 86.5
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.6e-188 662.9 414 81.4
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 7.8e-188 660.6 408 84.3
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 6.9e-176 620.9 412 78.2
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 9.9e-175 617.1 412 77.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.1e-169 599.4 412 76.9
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 4.8e-169 598.2 413 76.0
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.2e-169 597.8 412 75.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 8.1e-169 597.4 414 76.1
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.1e-168 595.5 414 75.8
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.1e-168 595.5 413 75.8
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 9.0e-168 594.0 421 74.3
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.2e-166 589.3 414 75.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 9.3e-165 583.9 414 75.4
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.1e-155 551.6 406 71.4
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 7.4e-154 547.7 406 70.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.3e-153 547.0 407 70.8
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.3e-152 541.6 414 68.4
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.9e-152 541.2 283 98.6
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.3e-150 537.0 416 66.1
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.2e-150 536.2 411 67.9
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.9e-150 535.8 353 75.4
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.4e-149 533.5 361 74.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 4.2e-149 531.9 416 67.1
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.8e-147 526.6 355 73.5
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.8e-147 526.6 409 66.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.8e-147 526.6 410 63.9
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.3e-147 526.2 409 66.5
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.5e-146 523.5 356 76.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.5e-146 523.5 408 66.4
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.0e-146 523.1 357 73.4
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.5e-146 522.7 348 71.8
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 3.3e-146 522.3 399 67.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.7e-145 520.0 405 64.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.2e-145 519.6 400 67.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 3.7e-145 518.8 397 69.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.8e-145 518.5 375 70.1
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 8.2e-145 517.7 398 67.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.2e-145 517.7 411 65.0
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 8.2e-145 517.7 333 79.0
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.1e-144 517.3 404 65.3
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.4e-144 516.2 353 72.5
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 4.1e-144 515.4 403 65.8
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 5.3e-144 515.0 408 65.2
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 5.9e-143 511.5 404 66.8
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.0e-142 510.8 412 64.1
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-142 510.0 367 68.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.2e-142 509.6 414 64.7
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 5.0e-142 508.4 367 68.7
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.0e-142 508.4 355 70.7
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.1e-141 507.3 355 70.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.1e-141 507.3 356 71.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-141 506.5 355 70.7
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 3.2e-141 505.8 362 69.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.2e-141 505.8 367 68.7
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.2e-141 505.4 389 66.8
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.2e-141 504.6 355 69.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.6e-140 503.4 352 70.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.1e-140 503.1 401 64.6
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.1e-140 503.1 412 63.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 2.1e-140 503.1 356 70.5
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.6e-140 502.3 369 67.8
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 6.1e-140 501.5 351 71.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.8e-139 500.0 404 64.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.8e-139 500.0 404 64.9
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.3e-139 499.6 404 64.6
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.7e-137 493.4 329 76.0
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.8e-137 492.7 408 63.5
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.4e-136 490.3 346 69.7
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.8e-136 490.0 383 65.8
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.4e-136 489.6 373 65.7
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 3.1e-136 489.2 373 65.4
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 9.1e-136 487.6 403 61.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.2e-135 487.3 475 55.8
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.6e-135 486.1 348 65.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 4.5e-135 485.3 404 61.1
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.3e-134 483.8 372 64.5
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.2e-134 483.0 354 69.2
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.9e-134 482.6 400 62.2
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 6.5e-134 481.5 350 69.4
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 6.5e-134 481.5 344 69.5
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 6.5e-134 481.5 354 67.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 6.5e-134 481.5 377 64.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.5e-133 479.6 355 68.5
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 4.2e-133 478.8 354 66.1
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 9.4e-133 477.6 348 64.4
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.6e-132 475.7 353 67.7
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 6.1e-132 474.9 373 63.0
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.0e-131 474.2 395 61.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.4e-131 473.8 348 65.2
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.1e-128 464.2 415 58.3
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.1e-128 464.2 377 62.3
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.6e-127 459.5 330 68.8
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 7.7e-127 458.0 329 68.7
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.5e-125 453.8 354 65.5
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.4e-123 447.2 333 68.2
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 5.7e-122 441.8 379 61.2
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.4e-114 415.6 301 67.1
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 3.7e-113 412.5 373 58.4
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.5e-111 406.0 353 58.4
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.5e-111 405.6 337 58.2
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.9e-111 405.2 229 92.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.4e-107 394.0 352 58.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.3e-107 393.3 288 69.8
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-105 386.3 344 55.5
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.9e-105 385.6 339 58.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 4.6e-103 379.0 406 53.2
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-101 373.6 343 54.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.6e-100 370.5 345 53.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.5e-98 364.0 362 55.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.7e-97 360.5 317 54.6
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.6e-95 352.4 300 63.0
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 6.8e-83 312.0 416 45.4
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 8.4e-81 305.1 335 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.2e-75 285.8 321 45.8
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 9.9e-74 281.6 375 41.1
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.1e-72 275.4 313 45.7
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-69 266.9 311 45.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 8.1e-68 261.9 319 43.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-67 260.8 205 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.4e-66 256.5 293 44.0
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-64 251.1 184 70.1
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-64 249.6 291 42.6
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.1e-62 242.7 305 40.3
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-61 241.5 242 53.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.6e-61 239.2 297 42.4
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-60 237.7 313 38.3
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.1e-59 233.4 291 40.9
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.6e-58 230.3 155 77.4
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.6e-58 228.8 162 66.7
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.4e-57 225.7 271 43.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.1e-53 214.9 316 39.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.0e-47 192.6 152 55.3
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-44 184.9 330 33.3
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-43 181.8 314 34.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.9e-43 179.1 159 64.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-42 178.3 307 35.5
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.5e-42 176.4 159 58.5
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.7e-41 174.5 219 44.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-41 172.9 314 33.8
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-40 171.4 113 78.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.2e-40 170.2 134 61.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-39 167.2 323 31.9
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.1e-38 162.9 316 30.4
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-32 145.2 293 33.1
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-32 143.3 313 28.4
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-29 134.4 311 27.7
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.0e-29 134.4 294 29.6
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.3e-27 126.3 294 29.6
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 6.9e-27 125.9 77 83.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.1e-27 125.6 124 46.8
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.9e-25 120.6 97 68.0
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.5e-25 119.4 312 28.5
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.5e-24 116.3 325 29.2
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-23 114.0 223 30.5
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.6e-23 113.6 100 57.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.1e-22 109.8 370 27.6
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-21 107.5 189 32.8
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 7.4e-21 105.9 352 27.3
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.1e-19 99.0 308 27.9
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 3.8e-17 93.6 307 26.4
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 9.1e-11 72.4 62 59.7
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-10 70.9 147 32.7


User provided reference genes

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