Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 7.9e-123 443.7 217 100.0
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 2.3e-114 415.6 217 95.4
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 4.8e-112 407.9 217 93.1
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 3.2e-108 395.2 219 90.0
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 4.7e-107 391.3 217 89.4
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.2e-105 386.7 218 89.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 2.6e-105 385.6 218 88.5
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 9.8e-105 383.6 218 88.5
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.8e-104 382.1 218 87.6
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.8e-101 371.7 219 85.8
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 3.2e-100 368.6 218 86.2
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 3.2e-100 368.6 218 85.3
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.4e-98 363.2 217 82.5
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 9.5e-92 340.5 219 76.7
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 4.9e-80 301.6 219 69.9
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 7.0e-79 297.7 218 70.2
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 9.2e-79 297.4 224 69.6
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 9.2e-79 297.4 224 69.6
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.2e-78 297.0 223 70.4
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.2e-78 297.0 220 69.1
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.5e-78 295.4 220 67.7
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 7.8e-78 294.3 218 70.2
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.0e-77 293.9 224 67.4
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.3e-77 293.5 221 69.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.3e-77 293.5 221 67.9
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.0e-77 292.4 221 67.4
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 5.0e-77 291.6 218 68.3
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.9e-76 289.7 229 67.2
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 9.5e-76 287.3 221 67.4
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.1e-75 286.2 221 66.1
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.4e-74 283.5 221 66.5
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.8e-74 283.1 233 64.4
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.3e-74 282.7 219 67.1
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.2e-73 280.4 230 63.9
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.5e-73 280.0 186 73.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 3.4e-73 278.9 227 63.4
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.4e-73 278.9 221 63.8
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 7.5e-73 277.7 221 65.6
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.7e-72 276.6 224 64.3
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 2.2e-72 276.2 225 64.4
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 4.9e-72 275.0 209 65.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 8.3e-72 274.2 195 70.3
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 4.1e-71 271.9 228 62.3
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 7.1e-71 271.2 220 65.5
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 7.1e-71 271.2 222 62.6
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.6e-70 270.0 224 63.4
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.6e-70 270.0 192 70.3
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 2.1e-70 269.6 227 62.6
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 2.7e-70 269.2 226 61.9
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.7e-70 269.2 186 70.4
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 7.8e-70 267.7 220 65.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 7.8e-70 267.7 206 67.0
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.0e-69 267.3 186 70.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.7e-69 266.5 230 63.9
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 3.0e-69 265.8 173 74.6
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 3.9e-69 265.4 199 66.8
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 5.1e-69 265.0 210 64.8
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 6.6e-69 264.6 227 65.6
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 8.6e-69 264.2 225 64.0
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.9e-68 263.1 219 63.0
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.5e-68 262.7 230 61.3
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 3.3e-68 262.3 176 74.4
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 3.3e-68 262.3 183 68.9
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.3e-68 261.9 228 61.8
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 5.6e-68 261.5 225 61.3
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 7.3e-68 261.2 207 65.7
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 1.2e-67 260.4 201 67.2
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.2e-67 260.4 175 73.7
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.6e-67 260.0 230 62.2
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 3.6e-67 258.8 229 60.7
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.6e-67 258.8 175 72.0
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 4.0e-66 255.4 190 68.4
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 5.2e-66 255.0 227 61.2
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 6.8e-66 254.6 234 58.5
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 6.8e-66 254.6 219 61.2
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 8.9e-66 254.2 184 69.6
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.0e-65 253.1 204 65.7
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 3.4e-65 252.3 171 73.1
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 5.8e-65 251.5 175 70.9
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 5.8e-65 251.5 176 72.7
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.3e-64 250.4 152 79.6
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 7.1e-63 244.6 165 75.8
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 7.1e-63 244.6 165 75.8
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.1e-63 244.6 151 78.8
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.5e-60 236.9 179 63.7
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 7.3e-60 234.6 200 59.5
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.6e-59 233.4 181 66.3
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.7e-59 231.9 186 65.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.8e-58 229.9 157 73.2
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 5.2e-58 228.4 177 62.7
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 8.9e-58 227.6 174 65.5
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.2e-57 227.3 152 77.0
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.0e-57 226.5 151 72.8
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.8e-57 224.9 181 64.6
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 9.9e-57 224.2 153 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 2.3e-53 213.0 169 63.9
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 6.6e-53 211.5 173 60.7
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.3e-51 207.2 171 58.5
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 2.8e-51 206.1 223 52.5
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 9.0e-50 201.1 229 51.5
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 3.4e-49 199.1 151 65.6
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 7.6e-49 198.0 174 62.1
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.3e-48 197.2 231 50.2
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.7e-48 196.8 167 63.5
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 4.6e-46 188.7 220 50.5
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.6e-46 188.7 238 48.7
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.3e-43 180.6 196 47.4
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.2e-38 164.1 105 76.2
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.2e-38 164.1 220 45.9
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.1e-38 163.3 211 47.9
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 3.0e-37 159.5 110 72.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 1.1e-34 151.0 145 56.6
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.1e-34 149.4 95 78.9
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 4.0e-34 149.1 108 67.6
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 4.5e-33 145.6 168 50.6
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 6.0e-30 135.2 138 53.6
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.3e-28 129.4 95 66.3
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.3e-28 129.4 96 62.5
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.7e-27 125.9 76 80.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.8e-26 123.6 159 42.1
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.6e-25 119.8 112 56.2
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 3.4e-25 119.4 83 68.7
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.5e-25 119.0 142 49.3
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.1e-22 110.2 73 75.3
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 3.0e-21 106.3 73 72.6
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 5.3e-18 95.5 80 61.2
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.3e-16 90.9 103 47.6
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 7.2e-15 85.1 97 52.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.9e-14 81.6 53 73.6
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 6.7e-13 78.6 71 53.5
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.5e-09 67.4 58 55.2
Mapoly0030s0012 Marchantia polymorpha HOM05D020894 ORTHO05D021334 1.4e-07 60.8 129 32.6


User provided reference genes

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