Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 4.5e-147 524.6 273 100.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 3.3e-142 508.4 273 97.4
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.0e-132 473.8 273 91.2
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 3.8e-130 468.4 273 89.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 8.4e-130 467.2 273 87.9
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 7.9e-128 460.7 273 86.4
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 8.7e-127 457.2 275 86.9
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.1e-126 456.8 273 85.7
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.2e-123 446.8 273 84.6
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.2e-123 446.8 273 85.0
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.7e-120 435.6 338 70.4
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.0e-119 433.7 264 88.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.9e-114 415.6 273 79.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.9e-113 412.9 264 86.0
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 4.1e-108 395.2 271 74.9
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 5.3e-108 394.8 276 76.4
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.9e-106 389.0 267 76.8
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 8.5e-106 387.5 272 76.1
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.3e-103 379.4 273 73.3
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.3e-103 379.4 273 72.9
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 5.2e-103 378.3 273 72.2
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.3e-101 373.6 273 70.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.7e-101 373.2 273 72.5
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.8e-101 372.5 273 70.7
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.7e-101 372.1 266 72.9
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 4.8e-101 371.7 273 71.1
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.1e-100 370.5 273 71.4
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.8e-100 369.8 274 71.9
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.8e-100 369.8 277 69.3
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.4e-100 369.4 270 69.3
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 7.0e-100 367.9 274 68.6
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.2e-99 367.1 273 68.9
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.6e-99 366.7 273 70.7
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 2.6e-99 365.9 273 69.2
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.9e-99 364.8 268 69.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.7e-98 363.2 268 70.1
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 5.0e-98 361.7 273 68.1
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-98 360.9 289 65.7
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 8.5e-98 360.9 278 67.3
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.5e-97 360.1 271 69.4
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.9e-97 359.8 273 67.8
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 7.2e-97 357.8 275 69.1
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 7.2e-97 357.8 272 71.7
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 9.4e-97 357.5 273 67.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.1e-96 356.3 263 69.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 3.6e-96 355.5 271 71.6
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 6.1e-96 354.8 273 68.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 8.0e-96 354.4 268 69.8
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 4.0e-95 352.1 272 67.3
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.2e-95 351.7 279 67.0
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.8e-95 350.9 279 66.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.2e-94 350.5 304 62.8
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-94 350.1 279 66.7
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 7.5e-94 347.8 281 68.0
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 7.5e-94 347.8 271 67.2
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 9.7e-94 347.4 273 67.8
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.7e-93 346.7 274 66.8
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-93 346.7 279 66.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 4.1e-92 342.0 275 66.2
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 4.5e-91 338.6 268 66.0
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 5.9e-91 338.2 271 66.1
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.0e-90 337.4 274 66.1
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.0e-90 337.4 274 66.1
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.7e-90 336.7 273 66.3
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.5e-89 333.6 271 64.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.5e-89 332.8 260 65.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.5e-89 332.8 289 63.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.5e-89 332.8 273 64.8
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 3.2e-89 332.4 273 64.8
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 4.2e-89 332.0 280 62.9
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 9.4e-89 330.9 273 63.0
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.6e-88 328.9 248 68.5
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 3.6e-88 328.9 273 63.4
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 4.7e-88 328.6 273 65.2
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 4.7e-88 328.6 271 64.2
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 8.0e-88 327.8 271 63.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.3e-87 326.2 248 68.1
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.0e-87 325.5 273 64.1
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.5e-86 323.6 273 63.0
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.6e-86 322.8 274 65.7
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.6e-86 322.8 276 62.0
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 5.7e-86 321.6 273 62.6
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 2.0e-83 313.2 272 60.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.5e-81 304.3 222 70.3
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 9.5e-81 304.3 263 60.8
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.5e-78 297.0 266 63.2
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.2e-77 293.1 273 60.4
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 6.3e-77 291.6 273 56.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.2e-75 287.3 248 60.5
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.4e-71 273.9 271 55.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 3.1e-71 272.7 254 59.1
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.1e-68 264.2 272 53.3
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.2e-67 260.8 288 53.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 7.3e-65 251.5 192 67.2
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.1e-63 247.7 184 69.0
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 2.0e-62 243.4 273 51.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 5.8e-62 241.9 248 56.0
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.3e-61 240.7 196 62.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 7.1e-60 235.0 249 55.8
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 2.5e-57 226.5 263 47.5
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 3.7e-53 212.6 201 59.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 6.4e-53 211.8 268 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.1e-50 202.2 261 42.5
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.1e-47 194.5 145 66.9
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.6e-46 189.9 230 45.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 3.3e-41 172.9 346 38.4
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-36 156.8 115 73.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.4e-36 155.6 115 73.0
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.6e-35 152.5 141 59.6
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.3e-34 151.0 132 59.8
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-33 147.1 112 67.9
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.6e-32 144.1 108 70.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-29 134.0 84 79.8
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.9e-29 133.3 155 50.3
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 3.8e-29 132.9 149 53.0
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 6.4e-29 132.1 84 77.4
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 5.4e-28 129.0 161 46.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.1e-25 121.3 107 63.6
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.9e-25 120.6 74 87.8
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 3.1e-23 113.2 253 30.8
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.2e-22 111.3 272 30.9
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.0e-22 110.5 108 58.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 3.4e-22 109.8 74 77.0
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 5.8e-22 109.0 116 56.0
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 5.8e-22 109.0 104 55.8
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.0e-21 108.2 110 57.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-21 107.5 74 75.7
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 5.5e-20 102.4 103 60.2
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 5.5e-20 102.4 66 75.8
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-19 99.8 60 76.7
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 3.5e-19 99.8 56 89.3
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-16 91.3 69 60.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 2.3e-10 70.5 82 50.0
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 3.0e-10 70.1 140 38.6
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 5.7e-09 65.9 148 33.8


User provided reference genes

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