Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 4.4e-59 231.1 117 100.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 3.0e-52 208.4 111 94.6
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 1.7e-50 202.6 117 90.6
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 2.2e-50 202.2 117 86.3
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 1.2e-43 179.9 117 76.9
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 4.4e-43 177.9 119 74.8
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 9.8e-43 176.8 119 75.6
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 3.7e-42 174.9 110 77.3
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 3.3e-38 161.8 134 63.4
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.7e-34 149.4 109 65.1
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 9.2e-33 143.7 83 83.1
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.6e-32 142.9 91 78.0
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 8.6e-23 110.5 105 53.3
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 8.6e-23 110.5 110 51.8
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 4.7e-21 104.8 102 50.0
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 4.7e-21 104.8 79 63.3
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 6.2e-21 104.4 114 50.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 8.0e-21 104.0 85 55.3
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.1e-20 103.6 100 51.0
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 1.4e-20 103.2 101 52.5
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.4e-20 103.2 84 54.8
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.4e-20 103.2 83 57.8
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.8e-20 102.8 83 56.6
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.8e-20 102.8 85 58.8
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.3e-20 102.4 81 59.3
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 4.0e-20 101.7 78 59.0
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 5.2e-20 101.3 100 47.0
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 5.2e-20 101.3 100 48.0
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.2e-19 100.1 110 43.6
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 2.0e-19 99.4 105 47.6
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.6e-19 99.0 100 47.0
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 2.6e-19 99.0 90 56.7
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 2.6e-19 99.0 83 54.2
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 3.4e-19 98.6 105 45.7
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 5.8e-19 97.8 80 56.2
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.3e-18 96.7 88 52.3
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.7e-18 96.3 87 55.2
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.7e-18 96.3 100 47.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.2e-18 95.9 74 55.4
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.2e-18 95.9 93 52.7
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 2.2e-18 95.9 84 53.6
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 3.7e-18 95.1 84 54.8
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 4.9e-18 94.7 70 64.3
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 6.4e-18 94.4 70 62.9
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 6.4e-18 94.4 92 45.7
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 8.3e-18 94.0 87 50.6
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 8.3e-18 94.0 87 50.6
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.1e-17 93.6 70 61.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.1e-17 93.6 88 51.1
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 2.4e-17 92.4 95 49.5
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.4e-17 92.4 104 45.2
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 3.2e-17 92.0 101 45.5
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 4.1e-17 91.7 104 46.2
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 5.4e-17 91.3 107 48.6
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 9.2e-17 90.5 109 46.8
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 1.6e-16 89.7 77 57.1
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 2.7e-16 89.0 104 49.0
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 4.6e-16 88.2 83 53.0
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 4.6e-16 88.2 75 60.0
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 7.8e-16 87.4 97 50.5
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.0e-15 87.0 82 52.4
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.3e-15 86.7 101 47.5
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.7e-15 86.3 101 44.6
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 2.3e-15 85.9 80 51.2
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.3e-15 85.9 101 43.6
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 3.9e-15 85.1 83 53.0
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 5.1e-15 84.7 83 53.0
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 6.6e-15 84.3 72 52.8
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 8.6e-15 84.0 83 49.4
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 8.6e-15 84.0 97 43.3
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 3.3e-14 82.0 77 50.6
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.3e-14 82.0 105 44.8
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.3e-14 82.0 105 44.8
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-14 81.6 105 44.8
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-14 81.6 105 44.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 4.3e-14 81.6 104 46.2
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 9.5e-14 80.5 59 55.9
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.2e-13 80.1 61 59.0
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.6e-13 79.7 105 44.8
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.6e-13 79.7 105 44.8
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.6e-13 79.7 105 44.8
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 3.6e-13 78.6 81 48.1
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 3.6e-13 78.6 100 42.0
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.1e-12 77.0 79 51.9
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.4e-12 76.6 84 48.8
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.8e-12 76.3 67 50.7
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 2.3e-12 75.9 85 45.9
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 3.1e-12 75.5 83 49.4
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 3.1e-12 75.5 80 46.2
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 5.2e-12 74.7 75 52.0
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 5.2e-12 74.7 77 46.8
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 8.9e-12 73.9 61 52.5
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 8.9e-12 73.9 61 52.5
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 2.0e-11 72.8 66 54.5
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.4e-11 72.0 82 48.8
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 2.2e-10 69.3 55 61.8
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 4.9e-10 68.2 81 48.1
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 6.4e-10 67.8 76 44.7
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 8.3e-10 67.4 83 44.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 8.3e-10 67.4 83 44.6
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 1.4e-09 66.6 78 46.2
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 5.4e-09 64.7 79 44.3
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 7.1e-09 64.3 93 41.9
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.2e-08 63.5 68 50.0
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.2e-08 63.5 55 56.4
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 3.0e-07 58.9 71 42.3
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 5.1e-07 58.2 50 56.0
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 1.5e-06 56.6 75 45.3
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 2.5e-06 55.8 45 64.4
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 9.5e-06 53.9 84 36.9


User provided reference genes

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