Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.9e-259 898.7 460 100.0
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.3e-255 885.9 460 98.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 5.2e-249 864.0 460 96.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.7e-247 857.8 460 96.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 3.6e-242 841.3 461 93.9
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 3.1e-241 838.2 462 93.9
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.1e-241 838.2 461 93.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 5.2e-241 837.4 461 93.7
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-240 836.3 461 93.9
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.0e-240 835.5 461 93.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 7.1e-238 827.0 460 93.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.0e-220 768.5 461 84.6
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.5e-219 766.1 461 84.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.5e-219 765.4 458 84.9
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.6e-218 761.5 458 85.6
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.1e-217 758.4 455 84.4
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 6.9e-217 757.3 461 83.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 6.9e-217 757.3 461 83.5
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.9e-217 757.3 453 84.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-216 756.5 455 84.2
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-216 756.5 461 83.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.0e-216 755.7 461 83.5
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.5e-216 754.6 461 83.1
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-215 753.1 461 83.5
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-212 743.0 461 82.0
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.3e-212 742.3 461 82.2
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.3e-212 742.3 461 82.2
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.6e-210 736.1 482 79.5
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 4.8e-210 734.6 456 82.9
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-209 732.6 488 77.5
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.8e-201 706.1 482 77.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.4e-190 669.8 455 73.8
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.7e-186 656.4 460 72.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.8e-186 655.6 455 72.1
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.4e-185 652.5 460 73.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 5.3e-185 651.4 466 69.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 5.0e-183 644.8 460 70.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.1e-182 643.7 455 69.7
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.4e-182 643.3 455 71.9
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.4e-182 643.3 458 70.7
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.2e-182 642.1 460 71.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 3.2e-182 642.1 460 71.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 4.2e-182 641.7 391 81.8
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.2e-182 641.0 455 70.1
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.6e-181 638.6 458 70.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.8e-180 636.3 455 70.1
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 5.2e-180 634.8 455 70.5
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.7e-180 634.4 458 69.7
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.8e-180 634.0 451 72.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.3e-179 632.1 460 68.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 6.3e-178 627.9 477 68.3
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 8.2e-178 627.5 449 71.9
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.1e-177 627.1 477 68.3
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.6e-176 623.2 448 70.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.0e-176 622.9 448 70.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 4.5e-176 621.7 451 70.5
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.7e-175 619.8 449 69.3
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 8.5e-175 617.5 451 68.7
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.9e-174 616.3 458 68.6
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.6e-173 612.1 453 68.2
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.6e-173 612.1 453 68.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.7e-173 611.7 458 66.6
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.0e-172 610.5 448 69.0
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.8e-172 609.8 448 69.2
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 3.0e-172 609.0 448 67.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.7e-172 607.8 453 68.4
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.0e-171 606.3 459 65.1
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.0e-171 606.3 459 65.1
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 7.5e-171 604.4 457 66.1
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 9.7e-171 604.0 453 65.3
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.7e-170 603.2 449 66.6
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.7e-170 603.2 449 66.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.8e-170 602.4 457 67.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.8e-170 601.7 453 67.8
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 4.8e-170 601.7 449 67.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.1e-169 600.5 460 67.4
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.8e-169 599.7 463 67.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.1e-169 599.0 456 67.5
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.1e-169 598.6 455 65.9
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 4.1e-169 598.6 493 62.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 5.3e-169 598.2 453 67.3
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 9.1e-169 597.4 453 67.1
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.2e-168 597.0 457 67.4
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 5.9e-168 594.7 449 67.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.7e-167 593.2 469 65.5
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 5.0e-167 591.7 451 65.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.5e-166 590.1 386 76.2
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.5e-166 590.1 456 66.7
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.6e-165 585.5 457 67.0
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 6.1e-165 584.7 459 66.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.8e-164 583.2 486 61.5
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.0e-164 582.0 429 67.4
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.0e-163 579.7 445 67.0
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.7e-162 575.5 450 64.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.8e-161 573.2 450 64.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.0e-160 569.7 462 62.1
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-159 567.4 449 65.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-158 563.9 459 62.1
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.5e-158 561.6 474 62.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.1e-157 559.7 444 63.3
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.6e-157 558.9 421 68.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.0e-157 557.8 550 54.4
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.8e-156 556.6 453 61.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-153 547.4 391 67.5
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 9.2e-153 544.3 395 68.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.0e-151 540.8 396 67.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.9e-150 536.6 458 60.3
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.1e-149 533.1 479 58.0
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.4e-148 530.4 474 58.2
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.8e-148 530.0 447 59.3
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.3e-143 513.1 447 58.2
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.5e-142 509.6 291 91.4
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.0e-141 504.6 404 61.9
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.2e-137 492.7 454 56.2
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 7.8e-136 488.0 447 57.3
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.0e-135 487.6 383 62.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.7e-133 478.8 433 56.1
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 6.8e-132 474.9 448 54.0
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.9e-132 474.6 354 67.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.5e-131 471.5 447 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 3.5e-128 462.6 455 51.4
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.3e-124 449.9 456 50.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.9e-122 443.0 398 56.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-121 440.3 459 49.5
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-121 439.5 447 55.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.2e-121 439.5 459 49.5
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 9.2e-121 438.0 450 54.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.8e-117 426.4 278 73.7
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-115 420.6 453 48.1
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.9e-110 403.7 321 65.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.4e-100 370.9 454 45.6
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 9.3e-97 358.2 255 69.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.1e-95 352.4 391 50.1
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.3e-89 331.6 269 62.8
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.5e-81 307.0 455 39.1
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 6.3e-77 292.4 318 52.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.0e-71 275.0 450 39.6
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.8e-69 266.9 195 66.2
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.6e-59 234.6 179 67.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.2e-57 225.7 158 71.5
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.2e-53 212.2 129 76.0
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.0e-47 193.7 155 61.3
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.2e-46 191.8 194 52.1
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.4e-38 163.3 121 67.8
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.3e-37 161.8 125 62.4
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 8.9e-31 139.0 94 70.2
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.6e-27 126.7 135 51.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.0e-26 125.6 121 58.7
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.0e-26 124.0 112 54.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 5.6e-25 119.8 76 69.7
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.0e-22 111.3 72 72.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.4e-22 110.2 99 52.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.8e-15 88.2 59 74.6
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.3e-13 82.0 58 67.2
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.1e-11 74.7 63 55.6
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 3.5e-11 73.9 77 57.1
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.1e-08 62.8 42 71.4


User provided reference genes

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