Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G42110 Arabidopsis lyrata HOM05D007338 ORTHO05D009406 1.4e-40 169.1 81 100.0
AT3G59930 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 1.9e-37 158.7 81 92.6
AT5G33355 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 9.5e-37 156.4 81 91.4
Carub.0005s1075 Capsella rubella HOM05D007338 ORTHO05D009406 1.7e-22 109.0 81 63.0
Carub.0005s1076 Capsella rubella HOM05D007338 ORTHO05D009406 3.0e-22 108.2 81 63.0
AT1G34047 Arabidopsis thaliana HOM05D007338 ORTHO05D009406 3.9e-22 107.8 80 67.5
BcaB04g20323 Brassica carinata HOM05D007338 ORTHO05D009406 6.6e-22 107.1 78 67.9
BcaC09g49321 Brassica carinata HOM05D007338 ORTHO05D009406 1.5e-21 105.9 78 66.7
C01p37930 Brassica napus HOM05D007338 ORTHO05D009406 1.5e-21 105.9 78 66.7
BcaC06g31804 Brassica carinata HOM05D007338 ORTHO05D009406 2.5e-21 105.1 79 64.6
BcaC09g49311 Brassica carinata HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
BcaC09g49314 Brassica carinata HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
BcaC09g49318 Brassica carinata HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
BcaC09g49319 Brassica carinata HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
BcaC09g49324 Brassica carinata HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
A01p29990 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
A01p30010 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
A01p30020 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
A01p30030 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
A01p30050 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
A01p30070 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
C01p37910 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
C01p37970 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
C01p37980 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
C01p38030 Brassica napus HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
BraA01t03132Z Brassica rapa HOM05D007338 ORTHO05D009406 2.5e-21 105.1 78 66.7
BcaC09g49320 Brassica carinata HOM05D007338 ORTHO05D009406 3.3e-21 104.8 78 65.4
A01p30000 Brassica napus HOM05D007338 ORTHO05D009406 3.3e-21 104.8 78 65.4
C01p37940 Brassica napus HOM05D007338 ORTHO05D009406 3.3e-21 104.8 78 65.4
BcaB04g20324 Brassica carinata HOM05D007338 ORTHO05D009406 5.6e-21 104.0 78 65.4
BcaC06g31805 Brassica carinata HOM05D007338 ORTHO05D009406 5.6e-21 104.0 79 64.6
A01p30040 Brassica napus HOM05D007338 ORTHO05D009406 7.3e-21 103.6 78 65.4
BcaC09g49309 Brassica carinata HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 65.4
BcaC09g49316 Brassica carinata HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 65.4
C01p38000 Brassica napus HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 65.4
C01p38060 Brassica napus HOM05D007338 ORTHO05D009406 9.5e-21 103.2 78 65.4
A01p30060 Brassica napus HOM05D007338 ORTHO05D009406 1.6e-20 102.4 78 65.4
C01p37950 Brassica napus HOM05D007338 ORTHO05D009406 1.6e-20 102.4 78 65.4
BcaC04g22284 Brassica carinata HOM05D007338 ORTHO05D009406 2.1e-20 102.1 91 60.4
BcaC09g49322 Brassica carinata HOM05D007338 ORTHO05D009406 2.1e-20 102.1 78 64.1
C01p37920 Brassica napus HOM05D007338 ORTHO05D009406 2.1e-20 102.1 78 64.1
A09p17160 Brassica napus HOM05D007338 ORTHO05D009406 6.2e-20 100.5 91 57.1
C01p37960 Brassica napus HOM05D007338 ORTHO05D009406 6.2e-20 100.5 76 64.5
BcaC04g22279 Brassica carinata HOM05D007338 ORTHO05D009406 1.1e-19 99.8 91 58.2
C09p21220 Brassica napus HOM05D007338 ORTHO05D009406 1.1e-19 99.8 91 59.3
BolC9t55035H Brassica oleracea HOM05D007338 ORTHO05D009406 1.1e-19 99.8 91 58.2
BcaC07g40398 Brassica carinata HOM05D007338 ORTHO05D009406 1.4e-19 99.4 90 58.9
BcaC09g49310 Brassica carinata HOM05D007338 ORTHO05D009406 1.4e-19 99.4 79 64.6
C01p38040 Brassica napus HOM05D007338 ORTHO05D009406 1.4e-19 99.4 79 64.6
BolC1t03768H Brassica oleracea HOM05D007338 ORTHO05D009406 1.4e-19 99.4 79 64.6
Sp2g03780 Schrenkiella parvula HOM05D007338 ORTHO05D009406 3.1e-19 98.2 91 57.1
C04p48140 Brassica napus HOM05D007338 ORTHO05D009406 4.0e-19 97.8 94 53.2
BolC4t26404H Brassica oleracea HOM05D007338 ORTHO05D009406 4.0e-19 97.8 94 53.2
Sp4g10780 Schrenkiella parvula HOM05D007338 ORTHO05D009406 4.0e-19 97.8 92 54.3
Sp6g08720 Schrenkiella parvula HOM05D007338 ORTHO05D009406 5.2e-19 97.4 92 53.3
Sp5g03420 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.2e-18 96.3 92 51.1
C09p21390 Brassica napus HOM05D007338 ORTHO05D009406 1.5e-18 95.9 84 58.3
BcaB06g27588 Brassica carinata HOM05D007338 ORTHO05D009406 2.0e-18 95.5 94 52.1
BcaB06g27589 Brassica carinata HOM05D007338 ORTHO05D009406 2.0e-18 95.5 94 52.1
BcaB07g31240 Brassica carinata HOM05D007338 ORTHO05D009406 2.6e-18 95.1 91 57.1
BolC9t55025H Brassica oleracea HOM05D007338 ORTHO05D009406 4.4e-18 94.4 84 59.5
BcaB07g31238 Brassica carinata HOM05D007338 ORTHO05D009406 5.8e-18 94.0 91 56.0
C01p38020 Brassica napus HOM05D007338 ORTHO05D009406 5.8e-18 94.0 83 59.0
BolC1t03766H Brassica oleracea HOM05D007338 ORTHO05D009406 5.8e-18 94.0 83 59.0
Sp7g00850 Schrenkiella parvula HOM05D007338 ORTHO05D009406 5.8e-18 94.0 90 54.4
C09p21230 Brassica napus HOM05D007338 ORTHO05D009406 7.5e-18 93.6 82 61.0
A04p14100 Brassica napus HOM05D007338 ORTHO05D009406 9.8e-18 93.2 94 51.1
BraA04t17071Z Brassica rapa HOM05D007338 ORTHO05D009406 9.8e-18 93.2 94 51.1
Sp5g03400 Schrenkiella parvula HOM05D007338 ORTHO05D009406 9.8e-18 93.2 92 50.0
BraA01t03137Z Brassica rapa HOM05D007338 ORTHO05D009406 1.3e-17 92.8 83 57.8
BcaB07g31237 Brassica carinata HOM05D007338 ORTHO05D009406 1.7e-17 92.4 91 56.0
C09p21400 Brassica napus HOM05D007338 ORTHO05D009406 1.7e-17 92.4 79 59.5
BraA01t03129Z Brassica rapa HOM05D007338 ORTHO05D009406 2.2e-17 92.0 83 57.8
BraA01t03131Z Brassica rapa HOM05D007338 ORTHO05D009406 2.2e-17 92.0 83 57.8
BraA01t03133Z Brassica rapa HOM05D007338 ORTHO05D009406 2.2e-17 92.0 83 57.8
BraA01t03134Z Brassica rapa HOM05D007338 ORTHO05D009406 2.2e-17 92.0 83 57.8
BraA01t03136Z Brassica rapa HOM05D007338 ORTHO05D009406 2.2e-17 92.0 83 57.8
Sp5g03390 Schrenkiella parvula HOM05D007338 ORTHO05D009406 2.9e-17 91.7 92 48.9
Sp6g08680 Schrenkiella parvula HOM05D007338 ORTHO05D009406 2.9e-17 91.7 92 52.2
BraA01t03130Z Brassica rapa HOM05D007338 ORTHO05D009406 3.7e-17 91.3 84 58.3
Sp5g03410 Schrenkiella parvula HOM05D007338 ORTHO05D009406 6.4e-17 90.5 92 52.2
BcaB08g34762 Brassica carinata HOM05D007338 ORTHO05D009406 2.4e-16 88.6 95 48.4
BcaC09g49315 Brassica carinata HOM05D007338 ORTHO05D009406 3.2e-16 88.2 78 57.7
Carub.0005s1074 Capsella rubella HOM05D007338 ORTHO05D009406 7.0e-16 87.0 91 53.8
Sp2g03760 Schrenkiella parvula HOM05D007338 ORTHO05D009406 9.2e-16 86.7 91 50.5
Carub.0005s1073 Capsella rubella HOM05D007338 ORTHO05D009406 1.2e-15 86.3 91 53.8
BraA01t03135Z Brassica rapa HOM05D007338 ORTHO05D009406 1.6e-15 85.9 83 55.4
Carub.0005s1072 Capsella rubella HOM05D007338 ORTHO05D009406 2.0e-15 85.5 91 53.8
BcaC09g49317 Brassica carinata HOM05D007338 ORTHO05D009406 3.0e-14 81.6 78 53.8
A09p17150 Brassica napus HOM05D007338 ORTHO05D009406 8.6e-14 80.1 78 59.0
BraA09t37346Z Brassica rapa HOM05D007338 ORTHO05D009406 8.6e-14 80.1 78 59.0
CARHR284260 Cardamine hirsuta HOM05D007338 ORTHO05D009406 8.6e-14 80.1 58 62.1
Sp3g32460 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.1e-13 79.7 100 42.0
AL4G15700 Arabidopsis lyrata HOM05D007338 ORTHO05D013190 9.5e-13 76.6 78 46.2
SpUn1255_0010 Schrenkiella parvula HOM05D007338 ORTHO05D009406 1.6e-12 75.9 99 40.4
BolC1t03760H Brassica oleracea HOM05D007338 ORTHO05D009406 1.1e-11 73.2 56 58.9
Sp5g03380 Schrenkiella parvula HOM05D007338 ORTHO05D009406 5.2e-11 70.9 71 47.9
CARHR101940 Cardamine hirsuta HOM05D007338 ORTHO05D009406 2.0e-10 68.9 80 50.0
Sp7g07650 Schrenkiella parvula HOM05D007338 ORTHO05D009406 3.4e-10 68.2 93 41.9
BraA09t37396Z Brassica rapa HOM05D024172 ORTHO05D024522 2.9e-09 65.1 80 47.5
A09p17680 Brassica napus HOM05D024172 ORTHO05D024522 3.7e-09 64.7 80 47.5
BNapus_Darmor_BZH_scaffold_155p00070 Brassica napus HOM05D024172 ORTHO05D024522 8.3e-09 63.5 80 46.2
C09p22020 Brassica napus HOM05D024172 ORTHO05D024522 8.3e-09 63.5 80 46.2
BolC9t55107H Brassica oleracea HOM05D024172 ORTHO05D024522 8.3e-09 63.5 80 46.2
BolC1t05675H Brassica oleracea HOM05D011267 ORTHO05D013190 2.4e-08 62.0 80 47.5
BolC1t03757H Brassica oleracea HOM05D007338 ORTHO05D009406 2.7e-07 58.5 78 46.2
CARHR080190 Cardamine hirsuta HOM05D011267 ORTHO05D013190 3.5e-07 58.2 78 43.6
BraA01t04490Z Brassica rapa HOM05D011267 ORTHO05D013190 1.0e-06 56.6 80 45.0
AT3G05727 Arabidopsis thaliana HOM05D011267 ORTHO05D013190 1.7e-06 55.8 80 45.0


User provided reference genes

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