Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.6e-124 449.5 247 100.0
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 3.0e-110 402.1 248 90.7
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 3.2e-96 355.5 248 83.1
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 9.5e-72 274.2 234 68.4
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 1.6e-66 256.9 234 68.8
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 1.6e-66 256.9 234 68.8
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 1.6e-66 256.9 234 68.8
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 7.3e-64 248.1 235 62.1
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 1.4e-62 243.8 236 65.7
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 2.3e-62 243.0 236 61.9
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 2.3e-62 243.0 236 65.3
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 4.0e-62 242.3 238 63.9
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 8.9e-62 241.1 237 65.8
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 6.4e-60 235.0 236 58.9
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.9e-59 233.4 236 59.3
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 4.1e-59 232.3 236 60.2
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 6.6e-57 224.9 236 59.3
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 4.0e-54 215.7 232 56.9
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 4.4e-53 212.2 233 59.7
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 9.9e-53 211.1 233 59.2
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 8.4e-52 208.0 233 57.5
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 4.1e-51 205.7 233 57.9
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.4e-51 205.3 237 58.2
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.7e-49 200.3 178 72.5
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 6.6e-49 198.4 233 52.8
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 3.6e-47 192.6 232 55.2
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 1.7e-41 173.7 233 48.9
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.6e-37 159.8 197 51.3
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 2.6e-37 159.8 196 52.6
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.3e-36 157.5 197 52.3
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.7e-36 157.1 197 51.8
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 6.4e-36 155.2 197 51.8
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.2e-35 152.9 185 53.0
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.4e-35 152.1 249 47.0
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.7e-34 149.8 249 46.2
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.5e-34 149.4 249 46.6
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.6e-34 149.1 197 50.8
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.9e-34 148.3 249 45.0
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.7e-33 147.1 249 45.4
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 1.7e-33 147.1 238 42.0
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.3e-33 146.7 249 45.4
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.5e-32 144.1 249 44.2
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 1.3e-31 141.0 236 45.3
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 4.8e-31 139.0 248 41.1
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 8.1e-31 138.3 249 40.6
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.1e-30 137.9 235 45.5
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.1e-30 137.9 237 40.9
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 1.8e-30 137.1 194 54.6
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 5.3e-30 135.6 158 58.9
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 5.3e-30 135.6 237 45.1
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 9.0e-30 134.8 241 43.2
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 1.5e-29 134.0 255 42.4
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.6e-29 133.3 236 41.9
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 3.4e-29 132.9 217 49.3
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 5.8e-29 132.1 204 48.0
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 7.6e-29 131.7 194 50.0
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 1.7e-28 130.6 229 36.2
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 1.7e-28 130.6 230 39.6
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 2.2e-28 130.2 161 47.2
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 2.9e-28 129.8 232 40.1
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 2.9e-28 129.8 189 43.9
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 4.9e-28 129.0 220 37.7
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.1e-27 127.9 244 42.6
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 9.3e-27 124.8 200 49.5
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.6e-26 122.5 232 44.8
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 4.6e-26 122.5 190 47.4
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 6.0e-26 122.1 242 43.4
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 6.0e-26 122.1 237 40.1
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 7.9e-26 121.7 172 47.1
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 1.8e-25 120.6 233 39.9
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 3.0e-25 119.8 196 42.9
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 3.0e-25 119.8 249 40.2
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 3.9e-25 119.4 163 51.5
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 5.1e-25 119.0 198 43.9
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 5.1e-25 119.0 164 53.0
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 8.7e-25 118.2 159 49.1
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 8.7e-25 118.2 147 53.1
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.9e-24 117.1 240 37.1
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 7.4e-24 115.2 164 47.0
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 9.6e-24 114.8 172 45.9
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 1.3e-23 114.4 244 41.8
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 1.6e-23 114.0 203 43.3
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.6e-23 114.0 170 49.4
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.2e-23 112.1 164 47.6
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 6.2e-23 112.1 230 39.1
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.1e-22 111.3 195 43.1
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 1.1e-22 111.3 186 43.0
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.4e-22 110.9 156 53.2
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.8e-22 110.5 216 41.7
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.4e-22 110.2 169 38.5
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 2.4e-22 110.2 186 46.8
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 3.1e-22 109.8 186 43.0
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 4.0e-22 109.4 144 53.5
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 6.9e-22 108.6 154 47.4
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 1.2e-21 107.8 224 41.5
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 2.0e-21 107.1 238 34.9
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 2.0e-21 107.1 152 53.3
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 5.8e-21 105.5 241 37.8
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 7.6e-21 105.1 212 38.7
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.3e-20 104.4 161 46.6
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 3.8e-20 102.8 235 34.9
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 3.8e-20 102.8 197 45.2
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 4.9e-20 102.4 197 44.7
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 1.4e-19 100.9 150 46.0
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 1.9e-19 100.5 194 46.9
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 2.5e-19 100.1 156 48.1
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.2e-19 99.8 229 34.5
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 4.2e-19 99.4 231 39.4
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 4.2e-19 99.4 235 36.6
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 9.3e-19 98.2 234 37.6
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 1.2e-18 97.8 78 59.0
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.1e-18 97.1 226 38.1
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.1e-18 97.1 171 42.1
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 2.7e-18 96.7 77 59.7
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 3.5e-18 96.3 154 46.8
CARHR170000 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.6e-18 95.9 57 80.7
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 6.0e-18 95.5 69 62.3
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 6.7e-17 92.0 159 37.1
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 1.9e-16 90.5 215 35.3
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 2.5e-16 90.1 237 35.0
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 3.3e-16 89.7 153 47.7
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 7.4e-16 88.6 189 41.3
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 7.4e-16 88.6 147 43.5
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 9.6e-16 88.2 194 38.1
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 9.6e-16 88.2 231 36.4
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.3e-15 87.8 174 43.1
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 1.3e-15 87.8 199 39.7
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 1.3e-15 87.8 145 41.4
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 2.1e-15 87.0 223 36.8
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 2.1e-15 87.0 77 57.1
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 2.8e-15 86.7 226 36.7
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 4.8e-15 85.9 83 51.8
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 1.8e-14 84.0 181 39.2
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 3.1e-14 83.2 152 46.1
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 9.0e-14 81.6 223 35.9
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 2.0e-13 80.5 227 37.9
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 3.4e-13 79.7 137 50.4
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 5.9e-13 79.0 224 35.3
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 1.0e-12 78.2 284 31.3
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 2.2e-12 77.0 52 63.5
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 2.2e-12 77.0 154 46.1
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 6.5e-12 75.5 227 37.9
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 6.5e-12 75.5 128 49.2
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 1.9e-11 73.9 156 34.6
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 2.5e-11 73.6 227 34.8
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.2e-10 71.2 207 35.3
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 2.1e-10 70.5 154 42.9
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 3.5e-10 69.7 131 43.5
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 1.0e-09 68.2 90 61.1
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 1.0e-09 68.2 105 53.3
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.0e-09 68.2 80 42.5
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 1.3e-09 67.8 157 40.1
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 1.8e-09 67.4 223 35.4
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 3.0e-09 66.6 56 55.4
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 6.7e-09 65.5 201 36.8
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 1.1e-08 64.7 216 34.7
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.9e-08 63.9 193 32.6
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 9.0e-06 55.1 125 32.8


User provided reference genes

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