Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G41580 Arabidopsis lyrata HOM05D001444 ORTHO05D012314 2.2e-21 104.8 55 100.0
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 2.6e-14 81.3 48 89.6
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 5.8e-14 80.1 48 87.5
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 7.6e-14 79.7 48 87.5
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Glyma.06G236800 Glycine max HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 1.3e-13 79.0 48 85.4
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 2.2e-13 78.2 47 87.2
BcaC05g27912 Brassica carinata HOM05D001444 ORTHO05D003766 2.2e-13 78.2 47 87.2
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 2.2e-13 78.2 47 87.2
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 2.2e-13 78.2 47 87.2
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 2.2e-13 78.2 47 87.2
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 2.2e-13 78.2 47 87.2
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 2.2e-13 78.2 47 87.2
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 2.2e-13 78.2 48 83.3
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.2e-13 78.2 48 81.2
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 85.4
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 2.9e-13 77.8 48 83.3
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 3.8e-13 77.4 48 83.3
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 3.8e-13 77.4 48 83.3
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 3.8e-13 77.4 48 83.3
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 3.8e-13 77.4 48 83.3
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 83.3
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 83.3
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 83.3
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 83.3
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 83.3
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 83.3
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 81.2
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 5.0e-13 77.0 48 81.2
C09p52300 Brassica napus HOM05D001444 ORTHO05D012314 6.5e-13 76.6 47 85.1
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 6.5e-13 76.6 48 81.2
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 6.5e-13 76.6 48 81.2
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 8.4e-13 76.3 48 81.2
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 8.4e-13 76.3 48 81.2
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 8.4e-13 76.3 48 81.2
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 8.4e-13 76.3 48 81.2
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 8.4e-13 76.3 48 81.2
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 8.4e-13 76.3 48 81.2
Gohir.D09G069933 Gossypium hirsutum HOM05D001444 ORTHO05D012314 1.1e-12 75.9 48 83.3
Gorai.006G084200 Gossypium raimondii HOM05D001444 ORTHO05D012314 1.1e-12 75.9 48 83.3
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 1.1e-12 75.9 47 83.0
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 1.4e-12 75.5 48 81.2
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 1.4e-12 75.5 48 81.2
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 1.4e-12 75.5 48 81.2
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 1.4e-12 75.5 48 81.2
BcaC04g21082 Brassica carinata HOM05D001444 ORTHO05D014980 1.9e-12 75.1 47 85.1
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 3.2e-12 74.3 48 81.2
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 3.2e-12 74.3 48 77.1
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 4.2e-12 73.9 48 79.2
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 1.2e-11 72.4 48 79.2
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 1.6e-11 72.0 48 79.2
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 1.6e-11 72.0 48 79.2
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 2.1e-11 71.6 47 78.7
Nitab4.5_0000155g0080 Nicotiana tabacum HOM05D001444 ORTHO05D014980 3.5e-11 70.9 57 70.2
VMungo0251G2141 Vigna mungo HOM05D001444 ORTHO05D012314 4.6e-11 70.5 48 77.1
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 6.1e-11 70.1 48 72.9
Mapoly0002s0303 Marchantia polymorpha HOM05D001444 ORTHO05D003766 6.1e-11 70.1 50 70.0
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 6.1e-11 70.1 48 72.9
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 6.1e-11 70.1 48 72.9
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.1e-09 65.9 48 68.8
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 1.9e-09 65.1 47 70.2
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 1.9e-09 65.1 47 70.2
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 1.9e-09 65.1 66 59.1
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.9e-09 65.1 48 68.8
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 1.9e-09 65.1 47 66.0
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 2.5e-09 64.7 49 71.4
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 2.5e-09 64.7 48 64.6
AL881U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 3.3e-09 64.3 47 68.1
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 5.7e-09 63.5 48 68.8
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 9.7e-09 62.8 48 66.7
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 9.7e-09 62.8 48 64.6
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 9.7e-09 62.8 48 64.6
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 9.7e-09 62.8 48 64.6
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 1.3e-08 62.4 46 69.6
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 3.7e-08 60.8 48 60.4
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 6.3e-08 60.1 48 66.7
MCO16G463 Micromonas commoda HOM05D001444 ORTHO05D003766 6.3e-08 60.1 48 58.3
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 1.1e-07 59.3 36 86.1
Nitab4.5_0003894g0050 Nicotiana tabacum HOM05D001444 ORTHO05D012314 1.1e-07 59.3 36 86.1
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 4.1e-07 57.4 35 85.7
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 1.5e-06 55.5 44 61.4


User provided reference genes

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