Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 3.2e-160 568.5 327 100.0
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 3.5e-154 548.5 327 96.6
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 3.1e-147 525.4 327 93.6
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 1.2e-146 523.5 324 92.6
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 2.2e-140 502.7 324 89.2
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 4.1e-139 498.4 324 89.8
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 2.9e-129 465.7 319 85.0
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 6.8e-126 454.5 320 82.5
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 2.4e-123 446.0 324 83.3
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 2.4e-123 446.0 324 83.3
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 3.2e-123 445.7 322 82.9
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 7.0e-123 444.5 298 88.9
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 3.5e-122 442.2 324 81.8
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 8.3e-100 367.9 328 66.5
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.4e-99 367.1 324 69.4
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 3.2e-99 365.9 326 67.2
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 3.2e-99 365.9 322 69.9
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 3.2e-99 365.9 326 69.6
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 4.1e-99 365.5 329 65.3
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.6e-98 363.6 329 67.8
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 2.1e-98 363.2 329 68.7
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 6.0e-98 361.7 320 68.4
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 7.8e-98 361.3 329 67.5
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 1.3e-97 360.5 324 67.3
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 1.3e-97 360.5 324 67.9
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 3.0e-97 359.4 316 63.6
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 8.6e-97 357.8 323 68.7
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 1.1e-96 357.5 328 65.5
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.9e-96 356.7 323 68.7
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 4.3e-96 355.5 327 66.1
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.3e-96 355.5 323 68.7
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 7.3e-96 354.8 330 67.9
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 2.1e-95 353.2 326 64.4
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 2.1e-95 353.2 320 67.5
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 4.7e-95 352.1 320 65.9
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 6.2e-95 351.7 329 61.1
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 6.8e-94 348.2 327 67.3
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 5.8e-93 345.1 338 62.4
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 5.8e-93 345.1 318 67.3
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 1.7e-92 343.6 325 64.3
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 1.7e-92 343.6 323 64.4
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 2.2e-92 343.2 327 66.7
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.9e-91 340.1 325 64.3
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 2.4e-91 339.7 329 64.4
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 9.3e-91 337.8 325 66.2
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 9.3e-91 337.8 333 62.8
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 3.5e-90 335.9 323 67.2
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 3.5e-90 335.9 320 66.9
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 3.9e-89 332.4 321 62.9
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 8.7e-89 331.3 357 54.9
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.5e-88 330.5 321 64.5
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.9e-88 330.1 320 64.1
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 3.3e-88 329.3 324 63.9
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 3.3e-88 329.3 349 55.9
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 4.3e-88 328.9 323 65.6
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 7.3e-88 328.2 320 64.4
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 1.3e-87 327.4 317 65.3
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 2.1e-87 326.6 321 58.6
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 3.6e-87 325.9 322 64.6
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 4.8e-87 325.5 324 63.6
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 4.8e-87 325.5 322 64.9
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 3.1e-86 322.8 324 61.1
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 4.0e-86 322.4 322 63.4
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 6.9e-86 321.6 320 65.6
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.0e-85 320.1 319 64.9
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 2.6e-85 319.7 316 64.2
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 4.4e-85 318.9 327 56.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 5.8e-85 318.5 349 54.4
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 7.6e-85 318.2 325 61.2
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.3e-84 317.4 312 62.8
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 6.4e-84 315.1 322 63.7
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 1.9e-83 313.5 328 61.9
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 1.2e-82 310.8 322 59.3
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 1.6e-82 310.5 323 59.4
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 3.5e-82 309.3 317 61.5
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.7e-81 307.0 320 60.6
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 6.6e-81 305.1 325 59.4
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 8.7e-81 304.7 326 60.4
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 8.7e-81 304.7 326 60.4
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 1.1e-80 304.3 320 59.7
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.6e-79 300.4 323 55.1
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 8.1e-79 298.1 326 60.7
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 5.3e-78 295.4 316 61.7
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 1.5e-77 293.9 322 58.7
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 2.0e-77 293.5 325 59.4
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 2.0e-77 293.5 344 47.7
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.7e-76 290.4 169 83.4
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 1.7e-76 290.4 319 60.5
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 3.8e-76 289.3 333 57.4
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 3.8e-76 289.3 319 60.5
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 1.6e-74 283.9 324 50.9
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 2.7e-74 283.1 319 58.9
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 2.0e-69 266.9 321 55.5
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.4e-69 266.2 202 66.3
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 3.4e-69 266.2 312 57.4
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.6e-66 257.3 320 54.7
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 1.8e-62 243.8 283 58.7
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 4.0e-62 242.7 326 42.9
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 2.6e-61 240.0 324 55.2
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 3.8e-60 236.1 323 51.7
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 7.1e-59 231.9 175 63.4
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 2.8e-55 219.9 169 60.9
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.8e-54 217.2 171 57.9
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.1e-54 216.5 208 52.9
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.5e-53 214.2 168 60.1
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 5.9e-53 212.2 256 45.3
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.2e-52 210.3 208 51.9
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.5e-52 208.8 168 59.5
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 2.0e-48 197.2 170 57.1
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 2.2e-47 193.7 198 48.5
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 1.8e-46 190.7 165 54.5
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 2.5e-43 180.3 170 50.0
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 5.5e-43 179.1 187 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 5.9e-37 159.1 214 59.3
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 3.1e-30 136.7 99 63.6
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 5.3e-30 136.0 350 37.1
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 4.2e-27 126.3 251 31.9
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 5.5e-27 125.9 97 61.9
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 1.2e-24 118.2 75 70.7
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 2.6e-24 117.1 170 40.0
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 2.8e-23 113.6 74 67.6
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 8.3e-23 112.1 62 87.1
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 2.4e-22 110.5 69 76.8
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 6.5e-20 102.4 253 46.6
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.5e-19 100.5 353 28.3
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 4.0e-17 93.2 88 52.3
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 2.0e-13 80.9 50 70.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 2.8e-10 70.5 126 35.7
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 8.0e-10 68.9 54 63.0
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 8.0e-10 68.9 181 26.0
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 2.6e-08 63.9 111 35.1
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.4e-06 57.4 36 72.2
Rhsim05G0171500 Rhododendron simsii HOM05D005795 ORTHO05D007200 7.0e-06 55.8 44 59.1


User provided reference genes

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