Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G41110 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 9.8e-68 260.0 131 100.0
AL4G45960 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 2.2e-51 205.7 102 100.0
AT2G46535 Arabidopsis thaliana HOM05D010353 ORTHO05D011141 1.2e-49 199.9 102 97.1
Carub.0004s2925 Capsella rubella HOM05D010353 ORTHO05D011141 1.2e-49 199.9 111 89.2
Thhalv10001658m.g Eutrema salsugineum HOM05D010353 ORTHO05D011141 3.0e-48 195.3 102 95.1
CARHR141870 Cardamine hirsuta HOM05D010353 ORTHO05D011141 6.6e-48 194.1 102 93.1
Sp4g28580 Schrenkiella parvula HOM05D010353 ORTHO05D011141 1.1e-47 193.4 102 94.1
A04p34440 Brassica napus HOM05D010353 ORTHO05D011141 1.7e-43 179.5 96 90.6
C04p72210 Brassica napus HOM05D010353 ORTHO05D011141 3.8e-43 178.3 96 89.6
BolC4t28708H Brassica oleracea HOM05D010353 ORTHO05D011141 3.8e-43 178.3 96 89.6
BraA04t18902Z Brassica rapa HOM05D010353 ORTHO05D011141 6.4e-43 177.6 96 89.6
BcaC02g12670 Brassica carinata HOM05D010353 ORTHO05D011141 2.4e-42 175.6 97 90.7
BcaC02g07038 Brassica carinata HOM05D010353 ORTHO05D011141 1.2e-41 173.3 96 88.5
Aa31LG1G27920 Aethionema arabicum HOM05D010353 ORTHO05D011141 1.5e-39 166.4 107 84.1
A05p01240 Brassica napus HOM05D010353 ORTHO05D011141 1.3e-38 163.3 96 84.4
BraA05t19125Z Brassica rapa HOM05D010353 ORTHO05D011141 1.3e-38 163.3 96 84.4
BcaC02g12680 Brassica carinata HOM05D010353 ORTHO05D011141 2.1e-38 162.5 96 84.4
C04p01390 Brassica napus HOM05D010353 ORTHO05D011141 2.1e-38 162.5 96 84.4
BolC4t21792H Brassica oleracea HOM05D010353 ORTHO05D011141 3.6e-38 161.8 96 83.3
BcaB01g03204 Brassica carinata HOM05D010353 ORTHO05D011141 8.1e-38 160.6 115 73.0
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 8.4e-27 124.0 128 54.7
BcaC02g07015 Brassica carinata HOM05D010353 ORTHO05D011141 1.8e-24 116.3 60 86.7
AL5G44420 Arabidopsis lyrata HOM05D011689 ORTHO05D011141 3.9e-16 88.6 132 44.7
AT3G61840 Arabidopsis thaliana HOM05D011689 ORTHO05D011141 4.3e-15 85.1 83 55.4
A09p53870 Brassica napus HOM05D011689 ORTHO05D011141 3.7e-14 82.0 122 51.6
BcaC07g42597 Brassica carinata HOM05D011689 ORTHO05D011141 3.1e-13 79.0 136 45.6
C08p36670 Brassica napus HOM05D011689 ORTHO05D011141 5.3e-13 78.2 136 45.6
BolC8t51249H Brassica oleracea HOM05D011689 ORTHO05D011141 5.3e-13 78.2 136 45.6
Carub.0005s2858 Capsella rubella HOM05D011689 ORTHO05D011141 6.9e-13 77.8 126 46.0
Thhalv10006487m.g Eutrema salsugineum HOM05D011689 ORTHO05D011141 6.9e-13 77.8 110 50.9
CARHR172170 Cardamine hirsuta HOM05D011689 ORTHO05D011141 7.6e-12 74.3 126 44.4
Sp5g01530 Schrenkiella parvula HOM05D011689 ORTHO05D011141 3.8e-11 72.0 113 51.3
BraA09t40802Z Brassica rapa HOM05D011689 ORTHO05D011141 6.5e-11 71.2 131 45.0
Potri.012G016700 Populus trichocarpa HOM05D002242 ORTHO05D002275 7.9e-09 64.3 64 53.1
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 7.9e-09 64.3 103 40.8
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 7.9e-09 64.3 68 45.6
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.8e-08 63.2 62 51.6
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.8e-08 63.2 62 51.6
BcaC07g42612 Brassica carinata HOM05D011689 ORTHO05D011141 2.3e-08 62.8 112 46.4
BcaB02g07348 Brassica carinata HOM05D011689 ORTHO05D011141 3.0e-08 62.4 107 46.7
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 3.9e-08 62.0 59 49.2
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.9e-08 62.0 94 40.4
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 6.7e-08 61.2 61 49.2
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.7e-08 60.8 90 38.9
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 1.1e-07 60.5 100 41.0
BolC6t37962H Brassica oleracea HOM05D011689 ORTHO05D011141 1.1e-07 60.5 109 44.0
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 1.9e-07 59.7 63 47.6
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 1.9e-07 59.7 67 49.3
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.9e-07 59.7 90 44.4
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 3.3e-07 58.9 90 42.2
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 3.3e-07 58.9 69 43.5
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 3.3e-07 58.9 92 40.2
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 3.3e-07 58.9 67 47.8
EL10Ac3g05266 Beta vulgaris HOM05D002242 ORTHO05D002275 4.3e-07 58.5 90 37.8
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.3e-07 58.5 61 47.5
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.3e-07 58.5 61 47.5
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 4.3e-07 58.5 70 44.3
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 5.7e-07 58.2 91 39.6
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 5.7e-07 58.2 67 43.3
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 5.7e-07 58.2 61 47.5
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 7.4e-07 57.8 65 46.2
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 7.4e-07 57.8 87 42.5
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 7.4e-07 57.8 67 44.8
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 9.7e-07 57.4 84 41.7
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.3e-06 57.0 64 46.9
A07p25790 Brassica napus HOM05D011689 ORTHO05D011141 1.6e-06 56.6 108 43.5
BraA07t30219Z Brassica rapa HOM05D011689 ORTHO05D011141 1.6e-06 56.6 108 43.5
Ah.13g070390 Amaranthus hybridus HOM05D002242 ORTHO05D002275 2.2e-06 56.2 60 43.3
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 2.2e-06 56.2 76 42.1
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.2e-06 56.2 93 37.6
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 2.2e-06 56.2 65 47.7
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.2e-06 56.2 80 41.2
Phvul.006G114400 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 2.2e-06 56.2 85 40.0
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.8e-06 55.8 57 49.1
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 2.8e-06 55.8 71 45.1
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 4.8e-06 55.1 60 45.0
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 4.8e-06 55.1 55 47.3
CAN.G481.20 Capsicum annuum HOM05D002242 ORTHO05D002275 4.8e-06 55.1 54 46.3
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 4.8e-06 55.1 75 45.3
Nitab4.5_0007888g0030 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.8e-06 55.1 51 51.0
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 4.8e-06 55.1 100 40.0
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 4.8e-06 55.1 85 42.4
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 4.8e-06 55.1 91 39.6
VMungo0540G1854 Vigna mungo HOM05D002242 ORTHO05D002275 4.8e-06 55.1 86 40.7
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 6.3e-06 54.7 91 39.6
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 6.3e-06 54.7 69 42.0
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 8.2e-06 54.3 67 44.8
Thhalv10014570m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 8.2e-06 54.3 60 43.3
Glyma.19G257000 Glycine max HOM05D002242 ORTHO05D002275 8.2e-06 54.3 69 47.8
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 8.2e-06 54.3 62 43.5
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 8.2e-06 54.3 127 36.2
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 8.2e-06 54.3 81 40.7
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 8.2e-06 54.3 81 40.7
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 8.2e-06 54.3 65 47.7


User provided reference genes

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