Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.2e-130 469.9 262 100.0
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 9.0e-129 463.8 262 98.5
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 7.6e-128 460.7 262 94.7
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 97.7
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.4e-126 456.4 262 97.3
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-126 455.7 262 96.9
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 4.2e-126 454.9 262 96.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 4.2e-126 454.9 262 96.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 4.2e-126 454.9 262 96.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 4.2e-126 454.9 262 96.9
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 96.6
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 96.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 96.6
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-125 453.4 262 96.6
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.2e-125 453.4 262 96.6
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-125 452.6 262 96.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-125 452.2 262 96.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 96.6
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 2.3e-124 449.1 263 92.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.3e-124 449.1 263 96.2
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.3e-124 449.1 263 96.2
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.3e-124 449.1 263 96.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 8.7e-124 447.2 262 95.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 84.7
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 84.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 79.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 80.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 80.2
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.8
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.0
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.4
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.4
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.4
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.8
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.8
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.8
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.0e-108 397.1 262 78.6
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 78.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 79.0
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 78.6
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 78.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 78.6
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 78.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 77.9
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 78.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.9e-108 395.2 262 79.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.0
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 78.2
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.0
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 79.8
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 77.9
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 77.9
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.2
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 79.4
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 77.9
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 77.9
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 79.8
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 78.6
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 78.2
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 77.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.0
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 78.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 78.2
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.2
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 78.2
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.9
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 76.3
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.9
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 78.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 77.5
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 77.5
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.7e-106 388.7 261 77.8
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 6.2e-106 387.9 263 78.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 6.2e-106 387.9 263 78.3
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 78.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 78.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 78.2
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 76.7
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 77.1
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 77.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 77.1
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 6.9e-105 384.4 264 78.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 9.0e-105 384.0 263 77.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.0
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.3
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 77.1
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 77.9
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 77.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 77.1
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 77.9
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 2.6e-104 382.5 262 76.0
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 77.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 75.6
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 76.3
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.0e-103 380.6 263 76.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 76.3
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 75.6
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.2e-103 379.4 262 74.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.2e-103 379.4 259 77.2
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.9e-103 379.0 262 75.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.8e-103 378.6 253 77.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.8e-103 378.6 262 77.1
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.9e-103 378.3 264 76.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.5e-103 377.9 262 76.0
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.4e-102 376.7 264 77.3
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.2e-102 375.6 263 76.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 5.5e-102 374.8 262 76.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.8e-100 369.8 247 79.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 6.7e-100 367.9 270 73.3
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.5e-99 366.7 270 74.1
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.9e-99 366.3 247 78.5
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.9e-99 366.3 239 79.9
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.7e-99 364.0 262 74.0
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.8e-98 362.5 246 78.5
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 6.3e-98 361.3 262 73.7
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.4e-97 359.4 263 74.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 4.1e-97 358.6 263 74.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 5.3e-97 358.2 263 74.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 3.4e-96 355.5 263 74.1
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.0e-95 354.0 263 73.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.1e-94 350.5 248 75.4
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.0e-92 344.0 262 71.8
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.5e-91 340.1 249 71.1
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.0e-91 339.7 263 71.1
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.5e-91 339.3 262 69.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.4e-89 333.6 264 69.3
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 2.4e-89 332.8 218 80.7
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.9e-89 331.3 214 85.5
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.4e-88 328.9 241 74.3
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.8e-87 325.5 235 72.3
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.1e-86 323.9 226 73.5
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.4e-86 323.6 263 64.6
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 7.2e-86 321.2 210 80.0
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.7e-84 314.7 263 63.5
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.6e-83 312.8 223 71.7
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 3.7e-82 308.9 263 70.3
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.7e-82 308.9 266 64.3
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.8e-82 308.5 262 66.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 8.8e-76 287.7 267 59.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.1e-73 278.9 232 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.2e-72 277.3 234 61.5
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 5.0e-71 271.9 249 62.7
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 5.0e-71 271.9 204 71.6
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.5e-70 269.6 249 61.8
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.2e-69 267.3 208 68.3
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.1e-65 254.2 247 57.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.1e-65 254.2 262 58.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 9.1e-65 251.1 269 54.6
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.2e-62 242.3 209 61.2
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 4.0e-60 235.7 138 92.8
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-51 207.6 234 55.1
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.3e-50 201.4 245 48.6
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 7.0e-49 198.4 244 45.1
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.3e-46 188.3 130 72.3
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.4e-43 179.1 120 75.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 8.3e-42 174.9 118 78.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.6e-40 170.6 179 54.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.4e-35 152.9 192 48.4
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.8e-27 125.6 127 55.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.4e-26 122.1 96 65.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-18 97.8 57 86.0


User provided reference genes

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