Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 2.0e-239 832.0 412 100.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.6e-228 795.8 412 95.4
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 7.8e-220 766.9 412 91.7
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 3.9e-219 764.6 410 91.7
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 7.3e-218 760.4 412 90.3
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 4.1e-213 744.6 412 88.6
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.4e-213 744.2 412 88.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.4e-213 744.2 412 88.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.4e-213 744.2 412 88.6
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 7.1e-213 743.8 412 88.6
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.9e-210 735.7 410 87.3
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.0e-200 701.4 412 83.3
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.2e-190 669.1 412 80.6
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.2e-182 642.5 414 77.5
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 8.7e-171 604.0 412 72.3
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 6.2e-169 597.8 412 71.4
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.2e-169 597.8 412 71.4
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.8e-168 596.3 412 71.4
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 5.3e-168 594.7 412 71.1
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 7.6e-167 590.9 412 70.9
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 7.6e-167 590.9 411 71.0
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.3e-166 590.1 413 70.0
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.3e-166 590.1 411 71.3
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.3e-166 590.1 411 71.3
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.7e-166 589.7 412 69.4
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 2.5e-165 585.9 412 70.9
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.2e-165 585.5 412 70.6
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 5.5e-165 584.7 412 69.7
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 5.5e-165 584.7 412 70.4
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 7.1e-165 584.3 412 69.9
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 9.3e-165 583.9 412 69.9
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.2e-164 583.6 412 68.4
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-164 583.6 402 71.1
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-164 583.2 402 70.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.6e-164 583.2 412 70.1
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.1e-164 582.8 410 70.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.6e-164 581.6 412 68.7
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 7.9e-164 580.9 412 68.9
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 3.0e-163 578.9 412 68.9
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 3.9e-163 578.6 406 70.0
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.9e-163 578.6 412 68.9
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.7e-163 577.8 406 70.7
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 6.7e-163 577.8 412 67.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.9e-162 576.2 406 69.2
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.3e-162 575.5 406 69.2
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.3e-162 575.1 412 69.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 7.4e-162 574.3 412 70.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.8e-161 572.4 406 69.7
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 2.8e-161 572.4 412 69.7
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 3.7e-161 572.0 411 68.4
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 6.3e-161 571.2 412 70.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.1e-160 570.5 412 67.0
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.4e-160 570.1 411 68.4
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.8e-160 569.7 412 67.5
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 6.9e-160 567.8 412 69.9
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 9.0e-160 567.4 409 68.7
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 9.0e-160 567.4 413 69.2
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.5e-159 566.6 407 69.5
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.5e-159 566.6 409 68.7
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.9e-159 564.7 409 68.5
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.0e-158 563.9 412 68.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.9e-158 562.4 410 68.5
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 5.0e-158 561.6 412 67.0
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 8.5e-158 560.8 412 66.3
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.4e-157 560.1 412 67.0
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.9e-157 559.7 412 66.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.2e-157 558.5 412 67.5
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 4.2e-157 558.5 411 67.6
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 9.4e-157 557.4 411 67.4
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.6e-156 556.6 406 68.0
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.6e-156 556.6 406 68.2
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.7e-156 555.8 406 68.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.7e-156 555.8 412 66.3
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 3.6e-156 555.4 412 65.8
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.6e-156 555.1 409 68.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 4.6e-156 555.1 409 68.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 7.9e-156 554.3 406 67.0
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.0e-155 553.9 413 67.3
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.8e-155 553.1 412 68.0
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.3e-155 552.7 412 65.8
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 6.7e-155 551.2 407 66.6
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.7e-155 551.2 412 66.7
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 2.0e-154 549.7 412 68.0
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.0e-154 549.7 412 68.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 2.0e-154 549.7 411 64.0
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.0e-154 549.7 412 67.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.3e-154 548.9 407 67.3
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 4.3e-154 548.5 413 66.8
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 5.7e-154 548.1 410 67.8
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 7.4e-154 547.7 406 66.0
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 7.4e-154 547.7 406 66.7
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.3e-153 547.0 407 66.3
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.3e-153 547.0 412 66.0
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.3e-153 547.0 405 66.7
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.7e-153 546.6 405 66.7
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.8e-153 545.8 406 66.5
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 3.7e-153 545.4 427 64.4
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.4e-152 543.5 408 64.7
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.8e-152 543.1 408 65.0
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.3e-152 541.6 412 65.0
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.3e-150 537.0 412 65.5
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.4e-149 533.5 406 64.5
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 3.2e-149 532.3 407 65.1
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.1e-148 529.6 443 61.9
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 8.8e-147 524.2 406 66.3
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 3.3e-146 522.3 407 63.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 4.1e-144 515.4 492 55.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.5e-143 512.3 411 60.8
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.5e-141 505.0 364 68.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 6.1e-140 501.5 411 59.4
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 8.0e-140 501.1 408 60.0
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.8e-139 500.0 366 67.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 3.0e-139 499.2 412 61.9
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 2.6e-138 496.1 412 62.4
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 5.7e-138 495.0 408 59.1
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.2e-137 493.0 412 60.0
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-134 484.2 407 58.2
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 5.0e-134 481.9 354 66.1
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 5.4e-128 461.8 412 57.0
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.6e-127 460.3 317 72.2
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.5e-126 454.9 407 56.3
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 5.4e-120 435.3 417 52.3
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.0e-119 433.3 317 66.9
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 4.1e-112 409.1 273 70.3
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.9e-109 400.2 382 54.2
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 9.8e-106 387.9 317 58.4
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.3e-105 387.5 411 47.4
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 7.0e-104 381.7 414 45.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 3.0e-102 376.3 273 66.3
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.2e-96 356.3 416 47.4
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.4e-90 335.9 413 49.6
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.2e-87 327.8 271 61.3
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.3e-86 323.6 411 43.8
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.8e-76 289.3 444 40.8
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 9.0e-75 285.0 257 59.1
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 5.8e-66 255.8 176 71.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.9e-64 250.8 161 75.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.5e-61 240.4 217 55.3
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 3.7e-60 236.5 177 67.2
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 5.3e-59 232.6 170 64.1
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 4.5e-58 229.6 179 62.6
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.5e-53 214.5 134 77.6
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 4.8e-52 209.5 148 66.2
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.9e-51 205.7 192 55.7
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 7.6e-50 202.2 347 36.9
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.4e-48 198.0 106 86.8
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 9.0e-43 178.7 101 85.1
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 3.7e-28 130.2 93 66.7
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 4.4e-21 106.7 98 59.2
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.4e-19 101.7 78 65.4
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.6e-18 98.2 248 28.6
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 6.1e-15 86.3 88 55.7
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.8e-11 74.7 57 63.2


User provided reference genes

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