Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 5.4e-165 584.3 309 100.0
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-152 542.3 309 93.2
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.7e-142 509.6 314 88.5
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.0e-140 501.1 313 85.9
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.0e-139 500.4 313 85.9
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-137 493.0 309 86.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.3e-136 489.2 310 85.5
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.3e-136 489.2 310 85.5
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 6.8e-136 487.6 314 84.7
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.0e-135 486.1 310 84.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.6e-135 485.7 310 84.8
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.4e-135 485.3 310 84.8
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.8e-121 439.1 310 76.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.2e-118 429.5 316 75.3
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.0e-116 421.4 311 74.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.0e-115 420.6 307 73.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.7e-115 419.9 312 73.7
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.9e-115 418.7 312 74.0
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.3e-114 415.6 311 73.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 8.1e-113 411.0 309 72.2
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 5.3e-112 408.3 311 71.1
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.3e-110 403.7 309 71.5
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 9.3e-109 397.5 309 71.2
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-107 394.0 309 70.9
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.0e-107 394.0 309 70.9
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.3e-107 392.9 310 69.7
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.1e-107 391.7 299 70.6
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 7.1e-101 371.3 310 64.2
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.6e-100 368.6 291 65.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 7.9e-100 367.9 317 63.4
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 7.9e-100 367.9 320 63.4
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 5.1e-99 365.2 255 69.4
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.9e-98 363.2 313 63.6
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.9e-98 363.2 313 63.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.5e-98 362.8 313 63.3
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 3.3e-98 362.5 296 63.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.3e-98 362.1 295 63.7
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 4.3e-98 362.1 295 63.4
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 3.7e-97 359.0 293 64.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.7e-97 359.0 300 64.0
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 6.2e-97 358.2 291 62.9
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 6.2e-97 358.2 301 62.1
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 8.2e-97 357.8 291 62.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 8.2e-97 357.8 302 62.9
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 8.2e-97 357.8 261 65.5
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 8.2e-97 357.8 309 61.2
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.4e-96 357.1 260 65.8
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 3.1e-96 355.9 309 61.2
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 6.9e-96 354.8 244 69.7
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 9.0e-96 354.4 287 61.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.5e-95 353.6 291 62.5
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.4e-95 352.4 310 60.3
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 3.4e-95 352.4 299 64.2
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 7.6e-95 351.3 311 63.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.3e-94 350.5 244 67.2
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.7e-94 350.1 310 61.6
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.7e-94 350.1 303 62.0
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 8.4e-94 347.8 299 61.2
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.4e-93 347.1 299 61.9
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.4e-93 347.1 244 68.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 5.5e-93 345.1 253 68.0
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 5.5e-93 345.1 261 64.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.6e-92 343.6 239 67.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.6e-92 343.6 302 60.9
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 2.1e-92 343.2 246 67.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 3.5e-92 342.4 292 61.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.6e-92 342.0 305 60.3
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 6.1e-92 341.7 290 60.7
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 6.1e-92 341.7 273 63.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 7.9e-92 341.3 313 59.4
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 7.9e-92 341.3 300 59.7
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.3e-91 339.7 327 57.8
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.1e-90 337.4 295 60.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.5e-90 337.0 304 58.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.9e-90 336.7 306 59.8
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 3.3e-90 335.9 292 59.2
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 7.4e-90 334.7 278 61.9
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.6e-89 333.6 304 58.6
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.6e-89 333.6 286 62.9
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.2e-89 333.2 252 64.3
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 6.3e-89 331.6 272 63.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 6.3e-89 331.6 248 64.5
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.1e-88 330.9 243 65.8
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 3.1e-88 329.3 289 59.9
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.1e-88 329.3 236 67.4
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 9.0e-88 327.8 270 61.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.0e-87 326.6 310 57.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.6e-87 326.2 252 63.9
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 2.6e-87 326.2 254 63.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 4.5e-87 325.5 301 57.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 5.9e-87 325.1 223 77.1
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 7.7e-87 324.7 254 63.0
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.0e-86 324.3 280 60.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.9e-86 322.8 280 62.1
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 6.5e-86 321.6 266 62.0
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 6.5e-86 321.6 232 66.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.5e-85 319.7 295 57.3
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.5e-85 319.7 295 57.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.2e-85 319.3 286 60.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 9.4e-85 317.8 279 58.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 2.7e-84 316.2 272 66.5
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 4.6e-84 315.5 232 65.1
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.0e-83 314.3 293 57.3
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.0e-83 314.3 274 60.2
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.4e-83 313.9 287 58.5
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.3e-83 313.2 268 60.1
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.9e-83 312.4 273 56.4
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.5e-82 309.7 209 72.2
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 4.3e-82 308.9 264 57.6
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.7e-82 308.5 270 61.1
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 4.8e-81 305.4 232 61.2
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.1e-80 302.8 312 52.2
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.2e-79 300.8 282 56.4
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-79 300.4 273 57.1
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.0e-79 300.1 250 60.8
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 3.4e-79 299.3 225 64.9
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 3.4e-79 299.3 239 63.6
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 4.5e-79 298.9 262 58.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.9e-79 298.5 291 55.7
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 6.5e-78 295.0 241 59.8
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.1e-77 294.3 253 60.5
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.5e-77 293.1 259 57.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.5e-77 293.1 241 59.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 5.5e-77 292.0 320 49.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.8e-75 287.0 244 58.2
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 6.7e-75 285.0 304 53.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 6.3e-73 278.5 219 58.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.2e-73 278.1 330 47.6
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.4e-72 277.3 332 47.6
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.6e-71 273.1 297 48.5
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.0e-70 271.2 228 59.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.7e-66 255.4 211 61.1
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.0e-63 246.9 257 54.1
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.8e-57 226.5 234 44.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.8e-56 223.8 177 59.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.4e-56 223.4 405 37.5
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.4e-56 222.2 235 44.7
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.1e-52 210.3 236 44.9
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.8e-51 207.2 205 53.7
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.3e-51 206.8 194 62.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 6.8e-51 205.3 239 42.7
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.8e-49 199.9 260 45.8
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.9e-46 189.9 131 69.5
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.8e-43 180.6 146 61.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 5.7e-42 175.6 187 45.5
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.2e-33 147.1 130 56.2
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 3.6e-28 129.8 118 53.4
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.9e-22 109.8 88 60.2
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.2e-20 104.8 73 74.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 8.1e-20 102.1 107 46.7
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.0e-14 85.1 69 55.1
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.6e-13 79.3 58 62.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.6e-12 76.6 184 34.2
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.8e-11 74.3 106 42.5
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 5.2e-11 72.8 106 41.5
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 8.9e-11 72.0 73 49.3
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 2.9e-09 67.0 52 61.5
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.1e-07 60.8 48 58.3
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 3.9e-06 56.6 226 24.8


User provided reference genes

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