Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.4e-83 313.2 187 100.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.9e-75 284.3 190 84.7
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.3e-68 261.2 166 80.7
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.8e-67 259.6 193 81.3
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 7.0e-67 257.7 190 72.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 9.1e-67 257.3 189 72.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.6e-66 255.8 191 71.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 5.9e-66 254.6 163 79.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-65 253.4 166 78.9
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-64 250.4 163 77.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.1e-64 250.4 168 76.8
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-63 246.9 187 75.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-63 246.9 187 75.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-63 245.0 166 75.9
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 6.1e-63 244.6 191 75.9
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-62 241.1 166 75.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 6.7e-62 241.1 190 69.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 8.2e-60 234.2 160 76.2
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.3e-54 216.1 165 70.3
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.8e-54 214.5 184 69.0
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.9e-48 196.4 164 66.5
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.7e-44 183.3 187 56.1
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.7e-36 155.6 178 47.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.3e-36 154.5 166 55.4
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.1e-35 152.1 171 50.3
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.0e-34 149.8 171 54.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.5e-34 149.1 178 47.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 4.6e-34 148.7 181 50.3
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.0e-33 147.5 177 48.6
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.3e-33 147.1 181 49.2
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.9e-33 145.6 172 48.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.6e-33 144.8 179 49.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.1e-32 144.1 176 46.6
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.5e-32 143.7 186 44.6
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.5e-32 143.7 181 47.0
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.9e-32 143.3 168 52.4
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.5e-32 142.9 198 44.9
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.3e-32 142.1 179 46.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.3e-32 142.1 175 48.0
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.6e-32 141.7 178 49.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.6e-32 141.7 170 47.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.3e-32 141.4 166 53.0
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 7.3e-32 141.4 166 53.0
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.3e-32 141.4 181 48.1
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-31 140.6 166 53.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-31 140.2 172 46.5
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-31 140.2 180 46.1
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-31 140.2 173 47.4
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 2.1e-31 139.8 176 46.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-31 139.4 171 49.1
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-31 139.4 180 45.6
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.8e-31 139.4 180 45.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-31 138.7 166 53.0
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.7e-31 138.7 164 47.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.7e-31 138.7 173 46.2
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.7e-31 138.7 175 45.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 4.7e-31 138.7 171 50.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 4.7e-31 138.7 167 47.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 6.2e-31 138.3 179 44.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.2e-31 138.3 178 46.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 6.2e-31 138.3 169 48.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.0e-31 137.9 165 52.1
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.0e-30 137.5 165 50.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.0e-30 137.5 179 45.3
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-30 137.5 175 45.1
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.0e-30 137.5 182 45.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.8e-30 136.7 204 43.1
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-30 136.7 173 46.8
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.8e-30 136.7 180 46.1
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.3e-30 136.3 182 46.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.1e-30 136.0 163 49.1
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.1e-30 136.0 175 48.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 5.2e-30 135.2 175 49.1
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 5.2e-30 135.2 169 47.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.8e-30 134.8 177 48.6
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 8.9e-30 134.4 165 49.7
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.0e-29 133.3 186 43.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.0e-29 133.3 186 43.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.6e-29 132.9 168 48.2
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.6e-29 132.9 188 46.3
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 4.4e-29 132.1 177 45.8
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 7.5e-29 131.3 181 45.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-28 130.6 170 45.3
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.7e-28 130.2 179 42.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.7e-28 130.2 171 47.4
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.2e-28 129.8 163 47.2
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.2e-28 129.8 207 43.0
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.9e-28 129.4 188 45.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 3.7e-28 129.0 183 45.4
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 3.7e-28 129.0 179 45.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.9e-28 128.6 188 44.7
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.9e-28 128.6 188 44.7
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.9e-28 128.6 188 44.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.9e-28 128.6 178 47.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 8.3e-28 127.9 173 45.1
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.3e-28 127.9 187 51.3
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.4e-27 127.1 171 43.9
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-27 127.1 188 44.1
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-27 126.7 163 46.0
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.9e-27 126.7 179 43.6
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.4e-27 126.3 177 44.6
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.1e-27 125.6 208 43.3
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 4.1e-27 125.6 194 41.2
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.1e-27 125.6 188 43.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 4.1e-27 125.6 172 48.3
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.4e-27 125.2 177 47.5
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.4e-27 125.2 168 46.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 7.0e-27 124.8 178 45.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.2e-26 124.0 117 57.3
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-26 123.6 183 43.2
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-26 123.6 186 43.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.6e-26 123.6 185 42.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.0e-26 123.2 189 42.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.0e-26 123.2 161 44.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.0e-26 123.2 180 45.6
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.7e-26 122.9 183 42.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.5e-26 122.5 189 45.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.5e-26 122.5 163 44.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.5e-26 122.5 163 44.8
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.6e-26 122.1 174 42.5
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 6.0e-26 121.7 207 44.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 6.0e-26 121.7 184 42.9
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 6.0e-26 121.7 174 46.6
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.0e-26 121.7 194 41.8
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 6.0e-26 121.7 177 42.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 7.8e-26 121.3 207 44.4
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.8e-26 121.3 151 47.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.0e-25 120.9 189 42.9
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.3e-25 119.8 192 40.6
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.0e-25 119.4 185 40.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.9e-25 119.0 179 40.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.0e-25 118.6 174 46.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 5.0e-25 118.6 190 40.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.1e-24 117.5 194 41.2
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.5e-24 117.1 118 54.2
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 5.6e-24 115.2 178 43.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.3e-24 114.8 181 42.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 9.5e-24 114.4 181 38.7
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-23 113.6 193 39.9
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.6e-23 113.6 193 39.9
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-23 113.2 194 39.7
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.8e-23 112.8 150 46.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.8e-23 112.8 183 43.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.6e-23 112.5 178 42.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.6e-23 112.5 185 41.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.7e-23 112.1 146 44.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 4.7e-23 112.1 179 40.2
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.1e-22 110.9 184 39.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.8e-22 110.2 168 40.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.1e-22 109.4 170 40.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.1e-22 109.4 174 42.5
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.1e-22 109.4 191 40.8
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 4.0e-22 109.0 147 43.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 4.0e-22 109.0 183 39.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 6.8e-22 108.2 173 40.5
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 8.9e-22 107.8 155 41.9
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 8.9e-22 107.8 179 39.7
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.5e-21 107.1 121 49.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.5e-21 107.1 153 44.4
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.6e-21 106.3 193 37.8
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.7e-20 103.6 170 41.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.7e-20 103.6 183 38.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.9e-20 102.8 110 51.8
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.9e-20 102.1 125 45.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 6.4e-20 101.7 191 38.7
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.1e-19 100.9 179 41.9
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.2e-19 99.4 175 38.9
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.2e-19 99.4 175 39.4
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.2e-18 97.4 151 43.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.9e-17 92.4 103 52.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.3e-16 89.4 115 47.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 5.6e-16 88.6 141 39.7
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.8e-15 86.3 141 39.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 3.6e-15 85.9 136 41.9
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.8e-13 78.6 156 34.6
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.9e-12 76.3 173 37.0
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.9e-12 76.3 69 55.1
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.4e-11 72.0 74 52.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.7e-10 69.7 156 32.1
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 4.6e-10 68.9 166 36.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.0e-09 66.2 64 53.1
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-08 63.5 75 44.0
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 7.3e-08 61.6 119 32.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.2e-07 60.8 87 41.4


User provided reference genes

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