Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.1e-139 500.0 250 100.0
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.4e-118 429.9 250 87.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.1e-112 410.2 254 85.4
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.2e-101 373.6 262 75.6
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.6e-101 372.5 260 78.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.8e-86 323.2 255 70.6
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 5.8e-85 318.2 260 69.6
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 7.6e-85 317.8 257 69.6
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 4.9e-84 315.1 261 70.1
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.9e-83 313.2 262 68.7
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 3.2e-83 312.4 261 69.7
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-82 310.5 258 69.8
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.0e-81 305.8 262 67.6
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.1e-81 305.1 263 66.9
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.6e-81 304.7 260 66.9
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 4.8e-79 298.5 263 65.4
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 5.8e-77 291.6 256 65.2
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 4.2e-75 285.4 265 63.0
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.2e-69 267.3 256 61.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.5e-66 255.8 261 60.9
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-63 247.3 255 58.0
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-63 247.3 255 58.0
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.0e-61 240.0 256 57.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.7e-60 236.9 255 56.5
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.7e-60 236.9 255 56.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 5.0e-52 208.8 256 52.3
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 7.9e-50 201.4 266 51.5
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-49 199.5 252 50.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 4.3e-48 195.7 266 47.0
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.7e-48 195.3 180 62.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.2e-47 193.4 261 51.3
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.8e-47 193.0 269 49.4
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.8e-46 190.3 273 49.8
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.8e-46 190.3 261 48.7
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 4.1e-46 189.1 260 47.7
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.3e-46 188.7 264 47.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.9e-46 188.3 267 48.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-45 187.6 271 47.6
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 2.6e-45 186.4 267 48.7
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 2.2e-44 183.3 278 46.0
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.2e-44 183.3 259 47.5
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 7.2e-43 178.3 262 48.5
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 7.2e-43 178.3 262 46.6
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.1e-42 176.8 270 45.9
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 2.7e-42 176.4 283 45.6
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.7e-42 176.4 268 48.5
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.7e-42 176.4 259 44.4
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 4.6e-42 175.6 264 46.6
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 7.9e-42 174.9 259 44.8
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.0e-41 174.5 262 45.8
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 3.9e-41 172.6 277 43.7
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 3.9e-41 172.6 260 48.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.9e-41 172.6 264 47.0
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 6.7e-41 171.8 263 44.5
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.5e-40 170.6 273 44.0
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-40 170.6 262 45.0
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.0e-40 170.2 268 45.1
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.3e-39 167.5 260 44.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.3e-39 167.5 261 46.4
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.7e-39 166.0 266 44.7
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 6.3e-39 165.2 261 45.2
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-39 164.9 256 46.1
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-39 164.9 256 46.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-38 164.5 253 44.7
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-38 164.5 268 45.5
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.1e-38 164.5 292 42.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.8e-38 163.7 266 48.5
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.4e-38 163.3 256 45.7
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-38 163.3 256 45.3
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-38 163.3 256 45.3
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.1e-38 162.5 268 44.8
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 5.3e-38 162.2 261 44.4
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 5.3e-38 162.2 246 47.2
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 5.3e-38 162.2 313 39.3
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.9e-38 161.8 253 44.3
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 6.9e-38 161.8 257 43.2
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 9.1e-38 161.4 260 45.4
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 9.1e-38 161.4 255 45.1
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.2e-37 161.0 277 44.0
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-37 160.6 213 50.7
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-37 160.6 256 45.7
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.0e-37 160.2 123 73.2
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.0e-37 160.2 266 44.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 3.4e-37 159.5 255 44.3
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.5e-37 159.1 252 45.2
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 5.9e-37 158.7 260 43.8
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 5.9e-37 158.7 255 46.3
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 7.7e-37 158.3 254 43.3
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.7e-37 158.3 254 43.3
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 7.7e-37 158.3 267 44.2
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.3e-36 157.5 271 43.5
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-36 157.5 253 43.1
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 2.2e-36 156.8 288 42.7
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.2e-36 156.8 274 44.9
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.8e-36 156.0 267 43.1
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.8e-36 156.0 260 43.5
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 5.0e-36 155.6 264 43.6
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 6.5e-36 155.2 260 43.1
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.4e-35 154.1 160 56.2
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.4e-35 154.1 230 45.7
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.2e-35 152.9 266 42.9
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 3.2e-35 152.9 252 44.8
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 5.5e-35 152.1 254 44.9
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.2e-34 151.0 259 44.4
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.6e-34 150.6 264 43.9
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.6e-34 150.6 274 39.4
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.7e-34 149.8 246 43.5
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.6e-34 149.4 262 42.7
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 3.6e-34 149.4 264 43.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 6.1e-34 148.7 266 41.4
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.2e-33 145.6 257 42.0
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 6.7e-33 145.2 267 43.1
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.3e-32 142.9 237 43.0
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 5.7e-32 142.1 258 41.1
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 7.4e-32 141.7 277 41.9
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.8e-31 139.8 260 41.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 3.7e-31 139.4 279 39.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.7e-31 139.4 263 40.7
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 8.2e-31 138.3 267 42.7
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.8e-30 137.1 269 40.1
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 2.4e-30 136.7 256 41.0
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.1e-30 136.0 267 42.3
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 4.1e-30 136.0 254 42.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 9.1e-30 134.8 265 40.8
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.2e-29 134.4 270 41.9
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.6e-29 134.0 257 38.9
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.6e-29 134.0 269 42.4
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.0e-29 133.7 313 36.4
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 7.7e-29 131.7 255 42.0
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-27 127.9 214 44.9
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.1e-27 127.9 255 40.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.5e-27 127.5 267 39.7
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.5e-27 126.7 213 41.3
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 3.2e-27 126.3 255 43.1
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 3.2e-27 126.3 264 40.9
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.4e-27 124.8 257 38.5
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.6e-26 122.9 261 39.5
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.4e-25 120.9 253 37.5
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.8e-25 120.6 252 38.9
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.3e-25 120.2 252 39.7
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 4.0e-25 119.4 265 40.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.0e-25 119.4 198 41.9
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.2e-25 119.0 263 36.5
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 5.2e-25 119.0 258 37.6
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 8.8e-25 118.2 265 38.9
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.0e-24 117.1 256 37.1
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 2.6e-24 116.7 165 46.1
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.3e-24 116.3 252 36.5
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 7.5e-24 115.2 162 48.1
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 7.5e-24 115.2 259 36.3
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.3e-23 114.4 245 38.0
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 6.3e-23 112.1 254 38.6
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.2e-23 111.7 254 37.4
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.4e-22 110.2 254 37.0
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.1e-22 109.4 258 35.7
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.6e-21 107.5 97 64.9
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.7e-21 105.1 139 46.8
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.3e-20 104.4 251 33.1
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.0e-20 102.4 251 33.9
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 1.5e-19 100.9 130 50.8
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.9e-19 100.5 98 59.2
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 9.4e-19 98.2 192 39.6
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.2e-18 97.8 174 39.1
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 1.6e-18 97.4 164 40.9
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.8e-17 94.0 166 38.6
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.3e-17 93.6 248 34.7
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 7.5e-16 88.6 77 67.5
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.3e-15 87.8 134 40.3
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 6.3e-15 85.5 358 27.7
C03p27190 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-14 84.0 115 46.1
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 2.0e-13 80.5 199 35.2
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.5e-11 73.6 96 49.0
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.8e-09 67.4 64 59.4
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 6.8e-09 65.5 119 39.5
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 8.8e-09 65.1 53 62.3
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.5e-08 64.3 250 29.2
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 4.4e-08 62.8 231 30.7
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 2.2e-07 60.5 183 31.1
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 3.7e-07 59.7 225 31.6
BraA07t28705Z Brassica rapa HOM05D003503 ORTHO05D003885 6.3e-07 58.9 73 50.7
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 8.3e-07 58.5 182 30.2
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.1e-06 58.2 197 31.5
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.8e-06 57.4 118 38.1
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.8e-06 57.4 152 34.9
C04p28740 Brassica napus HOM05D003503 ORTHO05D003885 3.1e-06 56.6 102 43.1
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 4.1e-06 56.2 85 47.1


User provided reference genes

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