Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.0e-22 109.4 63 100.0
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 2.8e-20 101.3 63 92.1
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 3.7e-20 100.9 63 95.2
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-19 99.4 63 93.7
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 1.4e-19 99.0 63 93.7
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 1.4e-19 99.0 63 93.7
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-19 98.6 63 92.1
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-19 98.6 63 92.1
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 2.4e-19 98.2 63 92.1
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 2.4e-19 98.2 63 92.1
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 2.4e-19 98.2 63 92.1
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 2.4e-19 98.2 63 92.1
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 2.4e-19 98.2 63 92.1
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-19 97.4 63 92.1
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-19 97.4 63 92.1
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 4.1e-19 97.4 63 92.1
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 6.9e-19 96.7 63 88.9
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 6.9e-19 96.7 63 88.9
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 6.9e-19 96.7 63 88.9
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 6.9e-19 96.7 63 90.5
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 9.0e-19 96.3 63 88.9
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 2.6e-18 94.7 63 88.9
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 2.6e-18 94.7 63 90.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 3.4e-18 94.4 63 90.5
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 3.4e-18 94.4 63 90.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 3.4e-18 94.4 63 90.5
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 3.4e-18 94.4 63 90.5
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 3.4e-18 94.4 63 90.5
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 5.9e-18 93.6 63 90.5
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 1.0e-17 92.8 63 88.9
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-17 92.4 63 87.3
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-17 92.4 63 87.3
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 1.3e-17 92.4 63 85.7
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.7e-17 92.0 63 88.9
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 2.2e-17 91.7 63 85.7
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 2.9e-17 91.3 63 85.7
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 3.8e-17 90.9 63 87.3
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 3.8e-17 90.9 63 87.3
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 3.8e-17 90.9 63 87.3
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 5.0e-17 90.5 63 87.3
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 5.0e-17 90.5 63 87.3
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 1.4e-16 89.0 63 84.1
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 4.6e-15 84.0 63 81.0
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 6.3e-12 73.6 63 68.3
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 1.1e-11 72.8 63 68.3
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.4e-11 71.6 63 68.3
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 4.1e-11 70.9 63 65.1
A05p02620 Brassica napus HOM05D000031 ORTHO05D001033 5.3e-11 70.5 48 89.6
BolC4t21953H Brassica oleracea HOM05D000031 ORTHO05D001033 5.3e-11 70.5 48 89.6
BraA05t19255Z Brassica rapa HOM05D000031 ORTHO05D001033 5.3e-11 70.5 48 89.6
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 6.9e-11 70.1 63 69.8
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 6.9e-11 70.1 64 70.3
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 9.1e-11 69.7 67 70.1
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 9.1e-11 69.7 63 71.4
C04p03120 Brassica napus HOM05D000031 ORTHO05D001033 1.5e-10 68.9 48 87.5
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.0e-10 68.6 63 65.1
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 2.6e-10 68.2 67 68.7
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.4e-10 67.8 63 69.8
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 4.5e-10 67.4 61 67.2
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 4.5e-10 67.4 63 71.4
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 7.7e-10 66.6 65 64.6
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 7.7e-10 66.6 63 69.8
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 1.7e-09 65.5 65 66.2
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 65.6
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 2.9e-09 64.7 65 66.2
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 5.0e-09 63.9 65 64.6
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 5.0e-09 63.9 67 61.2
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 5.0e-09 63.9 63 66.7
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 5.0e-09 63.9 65 66.2
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.5e-09 63.5 63 61.9
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 6.5e-09 63.5 58 65.5
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.1e-08 62.8 63 61.9
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.9e-08 62.0 63 60.3
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 2.5e-08 61.6 64 59.4
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 3.2e-08 61.2 63 61.9
CANSAT80G2246 Cannabis sativa HOM05D005524 ORTHO05D005392 4.2e-08 60.8 64 64.1
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 5.5e-08 60.5 64 59.4
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 7.2e-08 60.1 63 58.7
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 9.4e-08 59.7 63 61.9
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 1.2e-07 59.3 65 61.5
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 1.6e-07 58.9 63 60.3
Gohir.D11G327300 Gossypium hirsutum HOM05D008862 ORTHO05D005392 1.6e-07 58.9 79 53.2
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 1.6e-07 58.9 54 64.8
Gorai.007G358200 Gossypium raimondii HOM05D008862 ORTHO05D005392 2.7e-07 58.2 79 51.9
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 2.7e-07 58.2 60 56.7
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 4.6e-07 57.4 64 57.8
Lalb_Chr03g0033981 Lupinus albus HOM05D005524 ORTHO05D005392 7.9e-07 56.6 61 62.3
MBI04_g13622_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 7.9e-07 56.6 61 59.0
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 1.0e-06 56.2 63 58.7
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 1.4e-06 55.8 65 61.5
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 1.4e-06 55.8 61 59.0
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.8e-06 55.5 63 57.1
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.3e-06 55.1 63 57.1
MBI04_g13621_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.3e-06 55.1 64 56.2
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 2.3e-06 55.1 64 57.8
DCAR_029662 Daucus carota HOM05D005524 ORTHO05D005392 6.7e-06 53.5 67 56.7


User provided reference genes

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